From: Navid Afkhami <navid.afkhami@mdc-berlin.de>
To: 60957@debbugs.gnu.org
Subject: [bug#60957] [PATCH 1/2] gnu: Add r-doubletcollection.
Date: Fri, 20 Jan 2023 09:57:59 +0100 [thread overview]
Message-ID: <20230120085800.47650-1-navid.afkhami@mdc-berlin.de> (raw)
* gnu/packages/bioinformatics.scm (r-doubletcollection): New variable.
---
gnu/packages/bioinformatics.scm | 40 +++++++++++++++++++++++++++++++++
1 file changed, 40 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 36c9db90bd..86d65d2031 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7986,6 +7986,46 @@ (define-public r-chromunity
Pore-C concatemers.")
(license license:gpl3))))
+(define-public r-doubletcollection
+ (let ((commit "c0d62f1853942ee6a087eaf7b000d9e4261e2dfd")
+ (revision "1"))
+ (package
+ (name "r-doubletcollection")
+ (version (git-version "1.1.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/xnnba1984/DoubletCollection")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "02cvibyc2nwc4037ramm5cskjwyrb9ib9hkrfhmvhbslkn5ixz1v"))))
+ (properties `((upstream-name . "DoubletCollection")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biocgenerics
+ r-doubletfinder
+ r-gam
+ r-ggplot2
+ r-ggthemes
+ r-mast
+ r-mclust
+ r-prroc
+ r-reticulate
+ r-scales
+ r-scdblfinder
+ r-scds
+ r-seurat
+ r-singlecellexperiment
+ r-slingshot
+ r-summarizedexperiment))
+ (home-page "https://github.com/xnnba1984/DoubletCollection")
+ (synopsis "Tool for finding doublets in scRNA-seq data")
+ (description
+ "This is an R package that integrates the installation of doublet-detection methods.
+In addition, this tool is used for execution and benchmark of those eight mentioned methods.")
+ (license license:gpl3+))))
+
(define-public r-pando
(package
(name "r-pando")
--
2.34.1
next reply other threads:[~2023-01-20 8:59 UTC|newest]
Thread overview: 4+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-01-20 8:57 Navid Afkhami [this message]
2023-01-20 8:58 ` [bug#60958] [PATCH 2/2] gnu: Add r-scds Navid Afkhami
2023-01-20 10:08 ` bug#60958: " Ricardo Wurmus
2023-01-20 10:07 ` bug#60957: [PATCH 1/2] gnu: Add r-doubletcollection Ricardo Wurmus
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