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dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=BvPpUczH; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-TUID: aXizU3JvyuVk * gnu/packages/bioinformatics.scm (r-doubletcollection): New variable. --- gnu/packages/bioinformatics.scm | 40 +++++++++++++++++++++++++++++++++ 1 file changed, 40 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 36c9db90bd..86d65d2031 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7986,6 +7986,46 @@ (define-public r-chromunity Pore-C concatemers.") (license license:gpl3)))) +(define-public r-doubletcollection + (let ((commit "c0d62f1853942ee6a087eaf7b000d9e4261e2dfd") + (revision "1")) + (package + (name "r-doubletcollection") + (version (git-version "1.1.0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/xnnba1984/DoubletCollection") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "02cvibyc2nwc4037ramm5cskjwyrb9ib9hkrfhmvhbslkn5ixz1v")))) + (properties `((upstream-name . "DoubletCollection"))) + (build-system r-build-system) + (propagated-inputs (list r-biocgenerics + r-doubletfinder + r-gam + r-ggplot2 + r-ggthemes + r-mast + r-mclust + r-prroc + r-reticulate + r-scales + r-scdblfinder + r-scds + r-seurat + r-singlecellexperiment + r-slingshot + r-summarizedexperiment)) + (home-page "https://github.com/xnnba1984/DoubletCollection") + (synopsis "Tool for finding doublets in scRNA-seq data") + (description + "This is an R package that integrates the installation of doublet-detection methods. +In addition, this tool is used for execution and benchmark of those eight mentioned methods.") + (license license:gpl3+)))) + (define-public r-pando (package (name "r-pando") -- 2.34.1