From: Antero Mejr via Guix-patches via <guix-patches@gnu.org>
To: 59792@debbugs.gnu.org
Cc: Antero Mejr <antero@mailbox.org>, lars@6xq.net
Subject: [bug#59792] [PATCH] gnu: Add python-pydicom.
Date: Sat, 3 Dec 2022 05:08:29 +0000 [thread overview]
Message-ID: <20221203050829.30666-1-antero@mailbox.org> (raw)
In-Reply-To: <20221203050357.30524-1-antero@mailbox.org>
* gnu/packages/python-science.scm (python-pydicom): New variable.
---
Please apply this patch first.
Supersedes #55989.
gnu/packages/python-science.scm | 46 +++++++++++++++++++++++++++++++++
1 file changed, 46 insertions(+)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 52fe1460bb..00bba25a4a 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -1656,6 +1656,52 @@ (define-public python-vaex-core
tabular datasets. This package provides the core modules of Vaex.")
(license license:expat)))
+(define-public python-pydicom
+ (package
+ (name "python-pydicom")
+ (version "2.3.1")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/pydicom/pydicom")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0q209i2jgwv5z1xhi7frydkplby7jaiz624pjq6vi51wvlmimpf6"))))
+ (build-system python-build-system)
+ (arguments
+ (list #:phases #~(modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ ;; skip tests using external data
+ (invoke "pytest" "-vv" "-k"
+ (string-append
+ " not TestDataElement"
+ " and not TestDatasetOverlayArray"
+ " and not TestReader"
+ " and not Test_JPEG_LS_Lossless_transfer_syntax"
+ " and not test_data_manager.py"
+ " and not test_encaps.py"
+ " and not test_encoders_pydicom.py"
+ " and not test_filewriter.py"
+ " and not test_gdcm_pixel_data.py"
+ " and not test_handler_util.py"
+ " and not test_jpeg_ls_pixel_data.py"
+ " and not test_numpy_pixel_data.py"
+ " and not test_overlay_np.py"
+ " and not test_pillow_pixel_data.py"
+ " and not test_rle_pixel_data.py"))))))))
+ (native-inputs (list python-pytest))
+ (propagated-inputs (list python-numpy python-pillow))
+ (home-page "https://github.com/pydicom/pydicom")
+ (synopsis "Python library for reading and writing DICOM data")
+ (description "@code{pydicom} is a Python library for reading and writing
+DICOM medical image files. It lets developers read, modify and write DICOM data
+in a pythonic way.")
+ (license license:expat)))
+
;;;
;;; Avoid adding new packages to the end of this file. To reduce the chances
;;; of a merge conflict, place them above by existing packages with similar
--
2.38.1
next prev parent reply other threads:[~2022-12-03 5:10 UTC|newest]
Thread overview: 5+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-12-03 5:03 [bug#59792] [PATCH] gnu: Add python-pynetdicom Antero Mejr via Guix-patches via
2022-12-03 5:08 ` Antero Mejr via Guix-patches via [this message]
2023-01-16 14:50 ` Maxim Cournoyer
2023-01-16 14:53 ` Maxim Cournoyer
2024-01-24 0:18 ` bug#59792: " Sharlatan Hellseher
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