From: Arun Isaac <arunisaac@systemreboot.net>
To: 55125@debbugs.gnu.org
Cc: Arun Isaac <arunisaac@systemreboot.net>
Subject: [bug#55125] [PATCH 5/9] gnu: fastahack: Use G-expressions.
Date: Tue, 26 Apr 2022 18:16:35 +0530 [thread overview]
Message-ID: <20220426124639.17159-5-arunisaac@systemreboot.net> (raw)
In-Reply-To: <20220426124639.17159-1-arunisaac@systemreboot.net>
* gnu/packages/bioinformatics.scm (fastahack)[arguments]: Rewrite
using G-expressions. Do not return #t from custom phases.
---
gnu/packages/bioinformatics.scm | 60 ++++++++++++++++-----------------
1 file changed, 29 insertions(+), 31 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7cdbb748ef..699a4eaf47 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14483,36 +14483,35 @@ (define-public fastahack
(base32 "0rp1blskhzxf7vbh253ibpxbgl9wwgyzf1wbkxndi08d3j4vcss9"))))
(build-system gnu-build-system)
(arguments
- `(#:tests? #f ; Unclear how to run tests: https://github.com/ekg/fastahack/issues/15
- #:phases
- (modify-phases %standard-phases
- (delete 'configure) ; There is no configure phase.
- (add-after 'unpack 'patch-source
- (lambda _
- (substitute* "Makefile"
- (("-c ") "-c -fPIC "))
- #t))
- (add-after 'build 'build-dynamic
- (lambda _
- (invoke "g++"
- "-shared" "-o" "libfastahack.so"
- "Fasta.o" "FastaHack.o" "split.o" "disorder.o")))
- (replace 'install
- (lambda* (#:key outputs #:allow-other-keys)
- (let* ((out (assoc-ref outputs "out"))
- (lib (string-append out "/lib"))
- (bin (string-append out "/bin")))
- (mkdir-p (string-append out "/include/fastahack"))
- (for-each
- (lambda (file)
- (install-file file (string-append out "/include/fastahack")))
- (find-files "." "\\.h$"))
- (install-file "fastahack" bin)
- (install-file "libfastahack.so" lib)
- (mkdir-p (string-append lib "/pkgconfig"))
- (with-output-to-file (string-append lib "/pkgconfig/fastahack.pc")
+ (list #:tests? #f ; Unclear how to run tests: https://github.com/ekg/fastahack/issues/15
+ #:phases
+ #~(modify-phases %standard-phases
+ (delete 'configure) ; There is no configure phase.
+ (add-after 'unpack 'patch-source
(lambda _
- (format #t "prefix=~a~@
+ (substitute* "Makefile"
+ (("-c ") "-c -fPIC "))))
+ (add-after 'build 'build-dynamic
+ (lambda _
+ (invoke "g++"
+ "-shared" "-o" "libfastahack.so"
+ "Fasta.o" "FastaHack.o" "split.o" "disorder.o")))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (lib (string-append out "/lib"))
+ (bin (string-append out "/bin")))
+ (mkdir-p (string-append out "/include/fastahack"))
+ (for-each
+ (lambda (file)
+ (install-file file (string-append out "/include/fastahack")))
+ (find-files "." "\\.h$"))
+ (install-file "fastahack" bin)
+ (install-file "libfastahack.so" lib)
+ (mkdir-p (string-append lib "/pkgconfig"))
+ (with-output-to-file (string-append lib "/pkgconfig/fastahack.pc")
+ (lambda _
+ (format #t "prefix=~a~@
exec_prefix=${prefix}~@
libdir=${exec_prefix}/lib~@
includedir=${prefix}/include/fastahack~@
@@ -14523,8 +14522,7 @@ (define-public fastahack
Description: Indexing and sequence extraction from FASTA files~@
Libs: -L${libdir} -lfastahack~@
Cflags: -I${includedir}~%"
- out ,version))))
- #t)))))
+ out #$version)))))))))
(home-page "https://github.com/ekg/fastahack")
(synopsis "Indexing and sequence extraction from FASTA files")
(description "Fastahack is a small application for indexing and
--
2.35.1
next prev parent reply other threads:[~2022-04-26 12:48 UTC|newest]
Thread overview: 13+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-04-26 12:44 [bug#55125] [PATCH 0/9] Cross-compile vcflib for RISC-V Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 1/9] gnu: tabixpp: Use G-expressions Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 2/9] gnu: tabixpp: Use #:make-flags Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 3/9] gnu: tabixpp: Use build tools specific to the target Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 4/9] gnu: tabixpp: Add bzip2 and xz to inputs Arun Isaac
2022-04-26 12:46 ` Arun Isaac [this message]
2022-04-26 12:46 ` [bug#55125] [PATCH 6/9] gnu: fastahack: Use compiler specific to the build target Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 7/9] gnu: vcflib: Use G-expressions Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 8/9] gnu: vcflib: Find submodule sources in native-inputs during cross-compilation Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 9/9] gnu: vcflib: Set absolute path to pkg-config Arun Isaac
2022-05-07 21:45 ` [bug#55125] [PATCH 0/9] Cross-compile vcflib for RISC-V Ludovic Courtès
2022-05-12 7:57 ` Arun Isaac
2022-05-09 8:31 ` bug#55125: " Efraim Flashner
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