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From: Arun Isaac <arunisaac@systemreboot.net>
To: 55125@debbugs.gnu.org
Cc: Arun Isaac <arunisaac@systemreboot.net>
Subject: [bug#55125] [PATCH 3/9] gnu: tabixpp: Use build tools specific to the target.
Date: Tue, 26 Apr 2022 18:16:33 +0530	[thread overview]
Message-ID: <20220426124639.17159-3-arunisaac@systemreboot.net> (raw)
In-Reply-To: <20220426124639.17159-1-arunisaac@systemreboot.net>

* gnu/packages/bioinformatics.scm (tabixpp)[arguments]: Set CC and CXX in
#:make-flags. In the build-libraries phase, use cxx-for-target instead of g++
and ar-for-target instead of ar.
---
 gnu/packages/bioinformatics.scm | 9 ++++++---
 1 file changed, 6 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6c24c1c26f..e745fa9353 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14279,7 +14279,9 @@ (define-public tabixpp
    (inputs
     (list htslib zlib))
    (arguments
-    (list #:make-flags #~(list "HTS_HEADERS="
+    (list #:make-flags #~(list (string-append "CC=" #$(cc-for-target))
+                               (string-append "CXX=" #$(cxx-for-target))
+                               "HTS_HEADERS="
                                (string-append "HTS_LIB="
                                               (search-input-file %build-inputs
                                                                  "/lib/libhts.a"))
@@ -14291,8 +14293,9 @@ (define-public tabixpp
               ;; Build shared and static libraries.
               (add-after 'build 'build-libraries
                 (lambda* (#:key inputs #:allow-other-keys)
-                  (invoke "g++" "-shared" "-o" "libtabixpp.so" "tabix.o" "-lhts")
-                  (invoke "ar" "rcs" "libtabixpp.a" "tabix.o")))
+                  (invoke #$(cxx-for-target)
+                          "-shared" "-o" "libtabixpp.so" "tabix.o" "-lhts")
+                  (invoke #$(ar-for-target) "rcs" "libtabixpp.a" "tabix.o")))
               (replace 'install
                 (lambda* (#:key outputs #:allow-other-keys)
                   (let* ((out (assoc-ref outputs "out"))
-- 
2.35.1





  parent reply	other threads:[~2022-04-26 12:53 UTC|newest]

Thread overview: 13+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2022-04-26 12:44 [bug#55125] [PATCH 0/9] Cross-compile vcflib for RISC-V Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 1/9] gnu: tabixpp: Use G-expressions Arun Isaac
2022-04-26 12:46   ` [bug#55125] [PATCH 2/9] gnu: tabixpp: Use #:make-flags Arun Isaac
2022-04-26 12:46   ` Arun Isaac [this message]
2022-04-26 12:46   ` [bug#55125] [PATCH 4/9] gnu: tabixpp: Add bzip2 and xz to inputs Arun Isaac
2022-04-26 12:46   ` [bug#55125] [PATCH 5/9] gnu: fastahack: Use G-expressions Arun Isaac
2022-04-26 12:46   ` [bug#55125] [PATCH 6/9] gnu: fastahack: Use compiler specific to the build target Arun Isaac
2022-04-26 12:46   ` [bug#55125] [PATCH 7/9] gnu: vcflib: Use G-expressions Arun Isaac
2022-04-26 12:46   ` [bug#55125] [PATCH 8/9] gnu: vcflib: Find submodule sources in native-inputs during cross-compilation Arun Isaac
2022-04-26 12:46   ` [bug#55125] [PATCH 9/9] gnu: vcflib: Set absolute path to pkg-config Arun Isaac
2022-05-07 21:45 ` [bug#55125] [PATCH 0/9] Cross-compile vcflib for RISC-V Ludovic Courtès
2022-05-12  7:57   ` Arun Isaac
2022-05-09  8:31 ` bug#55125: " Efraim Flashner

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