From: zimoun <zimon.toutoune@gmail.com>
To: 52123@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#52123] [PATCH] gnu: Add r-derfinderhelper.
Date: Fri, 26 Nov 2021 13:41:54 +0100 [thread overview]
Message-ID: <20211126124154.351822-1-zimon.toutoune@gmail.com> (raw)
* gnu/packages/bioconductor.scm (r-derfinderhelper): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a66cc22fff..3dc8c61c4e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1610,6 +1610,33 @@ (define-public r-delayedarray
@code{Matrix} objects, and ordinary arrays and data frames.")
(license license:artistic2.0)))
+(define-public r-derfinderhelper
+ (package
+ (name "r-derfinderhelper")
+ (version "1.28.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "derfinderHelper" version))
+ (sha256
+ (base32 "06x0wy2wzpngak1pnrj2p0xzlx1nbcz0hs3p9q5ic6ib2rgwrh35"))))
+ (properties `((upstream-name . "derfinderHelper")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-iranges" ,r-iranges)
+ ("r-matrix" ,r-matrix)
+ ("r-s4vectors" ,r-s4vectors)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/leekgroup/derfinderHelper")
+ (synopsis "Helper for derfinder")
+ (description
+ "This package speeds up the derfinder package when using multiple cores.
+It is particularly useful when using BiocParallel and it helps reduce the time
+spent loading the full derfinder package when running the F-statistics
+calculation in parallel.")
+ (license license:artistic2.0)))
+
(define-public r-bluster
(package
(name "r-bluster")
--
2.33.1
next reply other threads:[~2021-11-26 12:43 UTC|newest]
Thread overview: 2+ messages / expand[flat|nested] mbox.gz Atom feed top
2021-11-26 12:41 zimoun [this message]
2021-11-26 12:53 ` bug#52123: [PATCH] gnu: Add r-derfinderhelper Ludovic Courtès
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