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aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b=i5OyRbCr; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: -1.50 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b=i5OyRbCr; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: D4BCD3188 X-Spam-Score: -1.50 X-Migadu-Scanner: scn0.migadu.com X-TUID: DWm28B8i0miK * gnu/packages/bioconductor.scm (r-derfinderhelper): New variable. --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a66cc22fff..3dc8c61c4e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1610,6 +1610,33 @@ (define-public r-delayedarray @code{Matrix} objects, and ordinary arrays and data frames.") (license license:artistic2.0))) +(define-public r-derfinderhelper + (package + (name "r-derfinderhelper") + (version "1.28.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "derfinderHelper" version)) + (sha256 + (base32 "06x0wy2wzpngak1pnrj2p0xzlx1nbcz0hs3p9q5ic6ib2rgwrh35")))) + (properties `((upstream-name . "derfinderHelper"))) + (build-system r-build-system) + (propagated-inputs + `(("r-iranges" ,r-iranges) + ("r-matrix" ,r-matrix) + ("r-s4vectors" ,r-s4vectors))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/leekgroup/derfinderHelper") + (synopsis "Helper for derfinder") + (description + "This package speeds up the derfinder package when using multiple cores. +It is particularly useful when using BiocParallel and it helps reduce the time +spent loading the full derfinder package when running the F-statistics +calculation in parallel.") + (license license:artistic2.0))) + (define-public r-bluster (package (name "r-bluster") -- 2.33.1