* [bug#46448] [PATCH] gnu: bowtie1: Update to 1.3.0.
@ 2021-02-11 21:03 Mădălin Ionel Patrașcu
[not found] ` <87v9ayp9zj.fsf@elephly.net>
0 siblings, 1 reply; 2+ messages in thread
From: Mădălin Ionel Patrașcu @ 2021-02-11 21:03 UTC (permalink / raw)
To: 46448; +Cc: rekado, Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (bowtie1): Update to 1.3.0.
---
gnu/packages/bioinformatics.scm | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cbf08c5dd2..ab149d6aad 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1654,14 +1654,14 @@ gapped, local, and paired-end alignment modes.")
(define-public bowtie1
(package
(name "bowtie1")
- (version "1.2.3")
+ (version "1.3.0")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/bowtie-bio/bowtie/"
- version "/bowtie-src-x86_64.zip"))
+ version "/bowtie-" version "-src.zip"))
(sha256
(base32
- "0vmiqdhc9dzyfy9sh6vgi7k9xy2hiw8g87vbamnc6cgpm179zsa4"))
+ "11dbihdnrizc6qhx9xsw77w3q5ssx642alaqzvhxx32ak9glvq04"))
(modules '((guix build utils)))
(snippet
'(substitute* "Makefile"
@@ -1672,7 +1672,7 @@ gapped, local, and paired-end alignment modes.")
(arguments
'(#:tests? #f ; no "check" target
#:make-flags
- (list "all"
+ (list "CC=gcc" "all"
(string-append "prefix=" (assoc-ref %outputs "out")))
#:phases
(modify-phases %standard-phases
--
2.30.0
^ permalink raw reply related [flat|nested] 2+ messages in thread
* bug#46448: Fwd: Re: [PATCH] gnu: bowtie1: Update to 1.3.0.
[not found] ` <87v9ayp9zj.fsf@elephly.net>
@ 2021-02-11 21:39 ` Ricardo Wurmus
0 siblings, 0 replies; 2+ messages in thread
From: Ricardo Wurmus @ 2021-02-11 21:39 UTC (permalink / raw)
To: 46448-done
Ricardo Wurmus <rekado@elephly.net> writes:
> Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
>
>> * gnu/packages/bioinformatics.scm (bowtie1): Update to 1.3.0.
>
> Pushed with commit 160e4a95e7 with a slightly changed commit message to
> mention the change to the “arguments” field.
>
> Thanks!
--
Ricardo
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2021-02-11 21:03 [bug#46448] [PATCH] gnu: bowtie1: Update to 1.3.0 Mădălin Ionel Patrașcu
[not found] ` <87v9ayp9zj.fsf@elephly.net>
2021-02-11 21:39 ` bug#46448: Fwd: " Ricardo Wurmus
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