[bug#38635] [WIP PATCH v2] Add why3 and frama-c

[Julien Lepiller <julien@lepiller.eu>]

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Hi Guix!

I've updated my patches to the newest versions of why3 and frama-c. The
issue is still present as before:

$ frama-c --help

[kernel] User Error: cannot load plug-in 'zip': cannot load module
  Details: error loading shared library: Dynlink.Error
(Dynlink.Cannot_open_dll
"Failure(\"/gnu/store/jrbkl0ls1vqnr1w7gcbg8jlxcd1jp71m-profile/lib/ocaml/site-lib/zip/zip.cmxa:
invalid ELF header\")") [kernel] User Error: cannot load plug-in
'why3': cannot load module Details: error loading shared library:
Dynlink.Error (Dynlink.Cannot_open_dll
"Failure(\"/gnu/store/jrbkl0ls1vqnr1w7gcbg8jlxcd1jp71m-profile/lib/ocaml/site-lib/why3/why3.cmxs:
undefined symbol: camlGzip\")") [kernel] User Error: cannot load
plug-in 'frama-c-wp': cannot load module Details: error loading shared
library: Dynlink.Error (Dynlink.Cannot_open_dll
"Failure(\"/gnu/store/bicyz7li6bvrxh4kh2h1dc5398bx5xsm-frama-c-21.1/lib/frama-c/plugins/top/Wp.cmxs:
undefined symbol: camlWhy3__Theory\")") [kernel] User Error: Deferred
error message was emitted during execution. See above messages for more
information. [kernel] Frama-C aborted: invalid user input.

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From 45254e8c70eb186a587c49295555e6c3096d67ab Mon Sep 17 00:00:00 2001
From: Julien Lepiller <julien@lepiller.eu>
Date: Mon, 16 Dec 2019 12:09:16 +0100
Subject: [PATCH 1/2] gnu: Add why3.

* gnu/packages/maths.scm (why3): New variable.
---
 gnu/packages/maths.scm | 67 +++++++++++++++++++++++++++++++++++++++++-
 1 file changed, 66 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 97f57ddd24..aa3d0da77c 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -28,7 +28,7 @@
 ;;; Copyright © 2018 Adam Massmann <massmannak@gmail.com>
 ;;; Copyright © 2018, 2020 Marius Bakke <mbakke@fastmail.com>
 ;;; Copyright © 2018 Eric Brown <brown@fastmail.com>
-;;; Copyright © 2018 Julien Lepiller <julien@lepiller.eu>
+;;; Copyright © 2018-2020 Julien Lepiller <julien@lepiller.eu>
 ;;; Copyright © 2018 Amin Bandali <bandali@gnu.org>
 ;;; Copyright © 2019 Nicolas Goaziou <mail@nicolasgoaziou.fr>
 ;;; Copyright © 2019 Steve Sprang <scs@stevesprang.com>
@@ -69,6 +69,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system glib-or-gtk)
   #:use-module (guix build-system gnu)
+  #:use-module (guix build-system ocaml)
   #:use-module (guix build-system python)
   #:use-module (guix build-system ruby)
   #:use-module (gnu packages algebra)
@@ -80,11 +81,13 @@
   #:use-module (gnu packages check)
   #:use-module (gnu packages cmake)
   #:use-module (gnu packages compression)
+  #:use-module (gnu packages coq)
   #:use-module (gnu packages curl)
   #:use-module (gnu packages cyrus-sasl)
   #:use-module (gnu packages dbm)
   #:use-module (gnu packages documentation)
   #:use-module (gnu packages elf)
+  #:use-module (gnu packages emacs)
   #:use-module (gnu packages file)
   #:use-module (gnu packages flex)
   #:use-module (gnu packages fltk)
@@ -113,6 +116,7 @@
   #:use-module (gnu packages mpi)
   #:use-module (gnu packages multiprecision)
   #:use-module (gnu packages netpbm)
+  #:use-module (gnu packages ocaml)
   #:use-module (gnu packages onc-rpc)
   #:use-module (gnu packages pcre)
   #:use-module (gnu packages popt)
@@ -5970,3 +5974,64 @@ and conversions, physical constants, symbolic calculations (including
 integrals and equations), arbitrary precision, uncertainty propagation,
 interval arithmetic, plotting.")
     (license license:gpl2+)))
+
+(define-public why3
+  (package
+    (name "why3")
+    (version "1.3.1")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://gforge.inria.fr/frs/download.php/file"
+                                  "/38291/why3-" version ".tar.gz"))
+              (sha256
+               (base32
+                "16zcrc60zz2j3gd3ww93z2z9x2jkxb3kr57y8i5rcgmacy7mw3bv"))))
+    (build-system ocaml-build-system)
+    (native-inputs
+     `(("coq" ,coq)
+       ("ocaml" ,ocaml)
+       ("which" ,which)))
+    (propagated-inputs
+     `(("camlzip" ,camlzip)
+       ("ocaml-graph" ,ocaml-graph)
+       ("ocaml-menhir" ,ocaml-menhir)
+       ("ocaml-num" ,ocaml-num)
+       ("ocaml-zarith" ,ocaml-zarith)))
+    (inputs
+     `(("coq-flocq" ,coq-flocq)
+       ("emacs-minimal" ,emacs-minimal)
+       ("zlib" ,zlib)))
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'fix-configure
+           (lambda _
+             (setenv "CONFIG_SHELL" (which "sh"))
+             (substitute* "configure"
+               ;; find ocaml-num in the correct directory
+               (("\\$DIR/nums.cma") "$DIR/../nums.cma")
+               (("\\$DIR/num.cmi") "$DIR/../num.cmi"))
+             #t))
+         (add-after 'configure 'fix-makefile
+           (lambda _
+             (substitute* "Makefile"
+               ;; find ocaml-num in the correct directory
+               (("site-lib/num") "site-lib"))
+             #t))
+        (add-after 'install 'install-lib
+          (lambda _
+            (invoke "make" "byte")
+            (invoke "make" "install-lib")
+            #t)))))
+    (home-page "http://why3.lri.fr")
+    (synopsis "Deductive program verification")
+    (description "Why3 provides a language for specification and programming,
+called WhyML, and relies on external theorem provers, both automated and
+interactive, to discharge verification conditions.  Why3 comes with a standard
+library of logical theories (integer and real arithmetic, Boolean operations,
+sets and maps, etc.) and basic programming data structures (arrays, queues,
+hash tables, etc.).  A user can write WhyML programs directly and get
+correct-by-construction OCaml programs through an automated extraction
+mechanism.  WhyML is also used as an intermediate language for the verification
+of C, Java, or Ada programs.")
+    (license license:lgpl2.1)))
-- 
2.28.0


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From 408f2a6feffc8d86d0e3ff31b891614b160ed142 Mon Sep 17 00:00:00 2001
From: Julien Lepiller <julien@lepiller.eu>
Date: Mon, 16 Dec 2019 12:40:18 +0100
Subject: [PATCH 2/2] gnu: Add frama-c.

* gnu/packages/maths.scm (frama-c): New variable.
---
 gnu/packages/maths.scm | 38 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 38 insertions(+)

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index aa3d0da77c..a18d35504c 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -6035,3 +6035,41 @@ correct-by-construction OCaml programs through an automated extraction
 mechanism.  WhyML is also used as an intermediate language for the verification
 of C, Java, or Ada programs.")
     (license license:lgpl2.1)))
+
+(define-public frama-c
+  (package
+    (name "frama-c")
+    (version "21.1")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "http://frama-c.com/download/frama-c-"
+                                  version "-Scandium.tar.gz"))
+              (sha256
+               (base32
+                "0qq0d08dzr0dmdjysiimdqmwlzgnn932vp5kf8lfn3nl45ai09dy"))))
+    (build-system ocaml-build-system)
+    (arguments
+     `(#:tests? #f; no test target in Makefile
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'export-shell
+           (lambda* (#:key inputs #:allow-other-keys)
+             (setenv "CONFIG_SHELL" (string-append (assoc-ref inputs "bash")
+                                                   "/bin/sh"))
+             #t)))))
+    (inputs
+     `(("gmp" ,gmp)))
+    (propagated-inputs
+     `(("ocaml-biniou" ,ocaml-biniou)
+       ("ocaml-easy-format" ,ocaml-easy-format)
+       ("ocaml-graph" ,ocaml-graph)
+       ("ocaml-yojson" ,ocaml-yojson)
+       ("ocaml-zarith" ,ocaml-zarith)
+       ("why3" ,why3)))
+    (home-page "http://frama-c.com")
+    (synopsis "C source code analysis platform")
+    (description "Frama-C is an extensible and collaborative platform dedicated
+to source-code analysis of C software.  The Frama-C analyzers assist you in
+various source-code-related activities, from the navigation through unfamiliar
+projects up to the certification of critical software.")
+    (license license:lgpl2.1+)))
-- 
2.28.0