From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp1 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id UBOCC46aT1/QEwAA0tVLHw (envelope-from ) for ; Wed, 02 Sep 2020 13:13:50 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp1 with LMTPS id IFs8B46aT1+FTQAAbx9fmQ (envelope-from ) for ; Wed, 02 Sep 2020 13:13:50 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 7B5579404CA for ; Wed, 2 Sep 2020 13:13:49 +0000 (UTC) Received: from localhost ([::1]:59552 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kDSaA-0001TI-Qd for larch@yhetil.org; Wed, 02 Sep 2020 09:13:46 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:38958) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kDSSg-00015E-Hc for guix-patches@gnu.org; Wed, 02 Sep 2020 09:06:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:47100) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1kDSSg-000848-6w for guix-patches@gnu.org; Wed, 02 Sep 2020 09:06:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1kDSSg-0005ug-27 for guix-patches@gnu.org; Wed, 02 Sep 2020 09:06:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#38635] [WIP PATCH v2] Add why3 and frama-c References: <20191216124626.048f0e43@sybil.lepiller.eu> In-Reply-To: <20191216124626.048f0e43@sybil.lepiller.eu> Resent-From: Julien Lepiller Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 02 Sep 2020 13:06:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 38635 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 38635@debbugs.gnu.org Received: via spool by 38635-submit@debbugs.gnu.org id=B38635.159905194922710 (code B ref 38635); Wed, 02 Sep 2020 13:06:02 +0000 Received: (at 38635) by debbugs.gnu.org; 2 Sep 2020 13:05:49 +0000 Received: from localhost ([127.0.0.1]:58646 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kDSSM-0005u7-MW for submit@debbugs.gnu.org; Wed, 02 Sep 2020 09:05:49 -0400 Received: from lepiller.eu ([89.234.186.109]:49738) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kDSSJ-0005tx-IX for 38635@debbugs.gnu.org; Wed, 02 Sep 2020 09:05:42 -0400 Received: from lepiller.eu (localhost [127.0.0.1]) by lepiller.eu (OpenSMTPD) with ESMTP id b667dbfb for <38635@debbugs.gnu.org>; Wed, 2 Sep 2020 13:05:37 +0000 (UTC) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed; d=lepiller.eu; h=date:from :to:subject:message-id:mime-version:content-type; s=dkim; bh=xRd A5Ofu3qUS7cBm8Y5/jVuzUOLQY8zEwvMJt7q14HM=; b=bFXQetr1CMxstF0w3WP 1sJaak3W6L9g3KQ1tseIOXFIv389kX+7waMzsao5eZYR3vnwopeB6ULVqa44Dk/1 E5E4duKQIOd/Q9fc9ARTcO/3AWzbWlllx0IlAROm2jqT6oB3aoLl31cH1gWHuzRE 4VjREIa1nV/otp9qUGsfWzIw+3/hWONwItsOIPbQiymVyjrE/T5+tJQ0ZgVHRi1y JROxCisd+uBDLyRgHlMGXT4dIFNg8q/kVlUgt/mgAjRYAIgZbczSSyLAempp1scF XhvTrwV7dvOuV61peg3Q+t4fmI1X5JeAgI4uHJl/ed1sqa5c3FpGPbY4OyrrVVWA rhQ== Received: by lepiller.eu (OpenSMTPD) with ESMTPSA id 61c742bd (TLSv1.2:ECDHE-RSA-AES256-GCM-SHA384:256:NO) for <38635@debbugs.gnu.org>; Wed, 2 Sep 2020 13:05:37 +0000 (UTC) Date: Wed, 2 Sep 2020 15:05:30 +0200 From: Julien Lepiller Message-ID: <20200902150508.5c4a45e8@tachikoma.lepiller.eu> X-Mailer: Claws Mail 3.17.6 (GTK+ 2.24.32; x86_64-unknown-linux-gnu) MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="MP_/j7X1Bwt=V/zaysvKe+hHAY3" X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Spam-Score: -1.0 (-) X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Scanner: scn0 Authentication-Results: aspmx1.migadu.com; dkim=fail (rsa verify failed) header.d=lepiller.eu header.s=dkim header.b=bFXQetr1; dmarc=fail reason="SPF not aligned (relaxed)" header.from=lepiller.eu (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Spam-Score: 0.09 X-TUID: o7GMfMOMEPsW --MP_/j7X1Bwt=V/zaysvKe+hHAY3 Content-Type: text/plain; charset=US-ASCII Content-Transfer-Encoding: 7bit Content-Disposition: inline Hi Guix! I've updated my patches to the newest versions of why3 and frama-c. The issue is still present as before: $ frama-c --help [kernel] User Error: cannot load plug-in 'zip': cannot load module Details: error loading shared library: Dynlink.Error (Dynlink.Cannot_open_dll "Failure(\"/gnu/store/jrbkl0ls1vqnr1w7gcbg8jlxcd1jp71m-profile/lib/ocaml/site-lib/zip/zip.cmxa: invalid ELF header\")") [kernel] User Error: cannot load plug-in 'why3': cannot load module Details: error loading shared library: Dynlink.Error (Dynlink.Cannot_open_dll "Failure(\"/gnu/store/jrbkl0ls1vqnr1w7gcbg8jlxcd1jp71m-profile/lib/ocaml/site-lib/why3/why3.cmxs: undefined symbol: camlGzip\")") [kernel] User Error: cannot load plug-in 'frama-c-wp': cannot load module Details: error loading shared library: Dynlink.Error (Dynlink.Cannot_open_dll "Failure(\"/gnu/store/bicyz7li6bvrxh4kh2h1dc5398bx5xsm-frama-c-21.1/lib/frama-c/plugins/top/Wp.cmxs: undefined symbol: camlWhy3__Theory\")") [kernel] User Error: Deferred error message was emitted during execution. See above messages for more information. [kernel] Frama-C aborted: invalid user input. --MP_/j7X1Bwt=V/zaysvKe+hHAY3 Content-Type: text/x-patch Content-Transfer-Encoding: quoted-printable Content-Disposition: attachment; filename=0001-gnu-Add-why3.patch =46rom 45254e8c70eb186a587c49295555e6c3096d67ab Mon Sep 17 00:00:00 2001 From: Julien Lepiller Date: Mon, 16 Dec 2019 12:09:16 +0100 Subject: [PATCH 1/2] gnu: Add why3. * gnu/packages/maths.scm (why3): New variable. --- gnu/packages/maths.scm | 67 +++++++++++++++++++++++++++++++++++++++++- 1 file changed, 66 insertions(+), 1 deletion(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 97f57ddd24..aa3d0da77c 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -28,7 +28,7 @@ ;;; Copyright =C2=A9 2018 Adam Massmann ;;; Copyright =C2=A9 2018, 2020 Marius Bakke ;;; Copyright =C2=A9 2018 Eric Brown -;;; Copyright =C2=A9 2018 Julien Lepiller +;;; Copyright =C2=A9 2018-2020 Julien Lepiller ;;; Copyright =C2=A9 2018 Amin Bandali ;;; Copyright =C2=A9 2019 Nicolas Goaziou ;;; Copyright =C2=A9 2019 Steve Sprang @@ -69,6 +69,7 @@ #:use-module (guix build-system cmake) #:use-module (guix build-system glib-or-gtk) #:use-module (guix build-system gnu) + #:use-module (guix build-system ocaml) #:use-module (guix build-system python) #:use-module (guix build-system ruby) #:use-module (gnu packages algebra) @@ -80,11 +81,13 @@ #:use-module (gnu packages check) #:use-module (gnu packages cmake) #:use-module (gnu packages compression) + #:use-module (gnu packages coq) #:use-module (gnu packages curl) #:use-module (gnu packages cyrus-sasl) #:use-module (gnu packages dbm) #:use-module (gnu packages documentation) #:use-module (gnu packages elf) + #:use-module (gnu packages emacs) #:use-module (gnu packages file) #:use-module (gnu packages flex) #:use-module (gnu packages fltk) @@ -113,6 +116,7 @@ #:use-module (gnu packages mpi) #:use-module (gnu packages multiprecision) #:use-module (gnu packages netpbm) + #:use-module (gnu packages ocaml) #:use-module (gnu packages onc-rpc) #:use-module (gnu packages pcre) #:use-module (gnu packages popt) @@ -5970,3 +5974,64 @@ and conversions, physical constants, symbolic calcul= ations (including integrals and equations), arbitrary precision, uncertainty propagation, interval arithmetic, plotting.") (license license:gpl2+))) + +(define-public why3 + (package + (name "why3") + (version "1.3.1") + (source (origin + (method url-fetch) + (uri (string-append "https://gforge.inria.fr/frs/download.ph= p/file" + "/38291/why3-" version ".tar.gz")) + (sha256 + (base32 + "16zcrc60zz2j3gd3ww93z2z9x2jkxb3kr57y8i5rcgmacy7mw3bv")))) + (build-system ocaml-build-system) + (native-inputs + `(("coq" ,coq) + ("ocaml" ,ocaml) + ("which" ,which))) + (propagated-inputs + `(("camlzip" ,camlzip) + ("ocaml-graph" ,ocaml-graph) + ("ocaml-menhir" ,ocaml-menhir) + ("ocaml-num" ,ocaml-num) + ("ocaml-zarith" ,ocaml-zarith))) + (inputs + `(("coq-flocq" ,coq-flocq) + ("emacs-minimal" ,emacs-minimal) + ("zlib" ,zlib))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'configure 'fix-configure + (lambda _ + (setenv "CONFIG_SHELL" (which "sh")) + (substitute* "configure" + ;; find ocaml-num in the correct directory + (("\\$DIR/nums.cma") "$DIR/../nums.cma") + (("\\$DIR/num.cmi") "$DIR/../num.cmi")) + #t)) + (add-after 'configure 'fix-makefile + (lambda _ + (substitute* "Makefile" + ;; find ocaml-num in the correct directory + (("site-lib/num") "site-lib")) + #t)) + (add-after 'install 'install-lib + (lambda _ + (invoke "make" "byte") + (invoke "make" "install-lib") + #t))))) + (home-page "http://why3.lri.fr") + (synopsis "Deductive program verification") + (description "Why3 provides a language for specification and programmi= ng, +called WhyML, and relies on external theorem provers, both automated and +interactive, to discharge verification conditions. Why3 comes with a stan= dard +library of logical theories (integer and real arithmetic, Boolean operatio= ns, +sets and maps, etc.) and basic programming data structures (arrays, queues, +hash tables, etc.). A user can write WhyML programs directly and get +correct-by-construction OCaml programs through an automated extraction +mechanism. WhyML is also used as an intermediate language for the verific= ation +of C, Java, or Ada programs.") + (license license:lgpl2.1))) --=20 2.28.0 --MP_/j7X1Bwt=V/zaysvKe+hHAY3 Content-Type: text/x-patch Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename=0002-gnu-Add-frama-c.patch >From 408f2a6feffc8d86d0e3ff31b891614b160ed142 Mon Sep 17 00:00:00 2001 From: Julien Lepiller Date: Mon, 16 Dec 2019 12:40:18 +0100 Subject: [PATCH 2/2] gnu: Add frama-c. * gnu/packages/maths.scm (frama-c): New variable. --- gnu/packages/maths.scm | 38 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 38 insertions(+) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index aa3d0da77c..a18d35504c 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -6035,3 +6035,41 @@ correct-by-construction OCaml programs through an automated extraction mechanism. WhyML is also used as an intermediate language for the verification of C, Java, or Ada programs.") (license license:lgpl2.1))) + +(define-public frama-c + (package + (name "frama-c") + (version "21.1") + (source (origin + (method url-fetch) + (uri (string-append "http://frama-c.com/download/frama-c-" + version "-Scandium.tar.gz")) + (sha256 + (base32 + "0qq0d08dzr0dmdjysiimdqmwlzgnn932vp5kf8lfn3nl45ai09dy")))) + (build-system ocaml-build-system) + (arguments + `(#:tests? #f; no test target in Makefile + #:phases + (modify-phases %standard-phases + (add-before 'configure 'export-shell + (lambda* (#:key inputs #:allow-other-keys) + (setenv "CONFIG_SHELL" (string-append (assoc-ref inputs "bash") + "/bin/sh")) + #t))))) + (inputs + `(("gmp" ,gmp))) + (propagated-inputs + `(("ocaml-biniou" ,ocaml-biniou) + ("ocaml-easy-format" ,ocaml-easy-format) + ("ocaml-graph" ,ocaml-graph) + ("ocaml-yojson" ,ocaml-yojson) + ("ocaml-zarith" ,ocaml-zarith) + ("why3" ,why3))) + (home-page "http://frama-c.com") + (synopsis "C source code analysis platform") + (description "Frama-C is an extensible and collaborative platform dedicated +to source-code analysis of C software. The Frama-C analyzers assist you in +various source-code-related activities, from the navigation through unfamiliar +projects up to the certification of critical software.") + (license license:lgpl2.1+))) -- 2.28.0 --MP_/j7X1Bwt=V/zaysvKe+hHAY3--