[bug#32689]

[bug#32689]

[MadalinIonel.Patrascu]

Mădălin Ionel Patrașcu

System Administrator
Bioinformatics Platform
The Berlin Institute for Medical Systems Biology (BIMSB)
Max Delbrück Center (MDC)
Robert-Rössle-Straße 10
House 87, room 1.10
13125 Berlin, Germany

[bug#32689] [PATCH] gnu: Add r-quic.

[pimi]

gnu/packages/cran.scm (r-quic): New variable.
---
 gnu/packages/cran.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index fd4929c0f..d31f1c81a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5592,3 +5592,25 @@ with an initial V-D-J recombination event, starting the first phylogenetic tree.
 representing one simulated time step.  Various mutation events are possible at
 each time step, contributing to a diverse final repertoire.")
     (license license:gpl2)))
+
+(define-public r-quic
+  (package
+    (name "r-quic")
+    (version "1.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "QUIC" version))
+       (sha256
+        (base32 "021bp9xbaih60qmss015ycblbv6d1dvb1z89y93zpqqnc2qhpv3c"))))
+    (properties `((upstream-name . "QUIC")))
+    (build-system r-build-system)
+    (home-page "https://www.cs.utexas.edu/users/sustik/QUIC/")
+    (synopsis "Regularized sparse inverse covariance matrix estimation")
+    (description
+     "This package algorithm implements the l1 regularized Gaussian maximum likelihood
+estimation of the inverse of a covariance matrix.  It uses Newton's method and
+coordinate descent to solve the regularized inverse covariance matrix estimation
+problem.")
+    ;; on the home-page it is mentioned that the release is under GPLv3 or later
+    (license license:gpl3+)))
-- 
2.17.1

[bug#32689] [PATCH] gnu: Add r-abundant.

[pimi]

gnu/packages/cran.scm (r-abundant): New variable.
---
 gnu/packages/cran.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index d31f1c81a..41d6e44ed 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5614,3 +5614,27 @@ coordinate descent to solve the regularized inverse covariance matrix estimation
 problem.")
     ;; on the home-page it is mentioned that the release is under GPLv3 or later
     (license license:gpl3+)))
+
+(define-public r-abundant
+  (package
+    (name "r-abundant")
+    (version "1.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "abundant" version))
+       (sha256
+        (base32 "1m76qdmqvwpgm0sihazi2dna7cgsz9rljal18vgffb5wamwmg9k7"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-quic" ,r-quic)))
+    (home-page "https://cran.r-project.org/web/packages/abundant/")
+    (synopsis "Abundant regression and high-dimensional principal fitted components")
+    (description
+     "This package fits and predicts with the high-dimensional principal fitted components
+model.  It is demonstrated that asymptotic behavior of a class of methods for
+sufficient dimension reduction in high-dimension regressions, are consistent in
+a variety of settings, particularly in abundant regressions where most
+predictors contribute some information on the response, and oracle rates are
+possible.")
+    (license license:gpl2)))
-- 
2.17.1