* [bug#32623] [PATCH] gnu: Add r-abhgenotyper.
@ 2018-09-03 13:45 pimi
2018-09-13 17:14 ` bug#32623: " Ricardo Wurmus
0 siblings, 1 reply; 2+ messages in thread
From: pimi @ 2018-09-03 13:45 UTC (permalink / raw)
To: 32623; +Cc: pimi
gnu/packages/cran.scm (r-abhgenotyper): New variable.
---
gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 33dc61593..e72eec369 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5035,3 +5035,30 @@ practically sound, highly interpretable model.")
Axon Instruments/Molecular Devices software such as pClamp 10. Only files
recorded in gap-free mode are currently supported.")
(license license:artistic2.0)))
+
+(define-public r-abhgenotyper
+ (package
+ (name "r-abhgenotyper")
+ (version "1.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ABHgenotypeR" version))
+ (sha256
+ (base32 "08cpmnaaxsm5c5bjifnfxdlvg5inrf13biqpcl2yq5zpqjmiki0l"))))
+ (properties `((upstream-name . "ABHgenotypeR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-ggplot2" ,r-ggplot2)
+ ("r-reshape2" ,r-reshape2)))
+ (home-page "https://github.com/StefanReuscher/ABHgenotypeR/")
+ (synopsis "The @code{r-abhgenotyper} helps visualize and manipulate ABH genotypes")
+ (description
+ "The @code{r-abhgenotyper} package provides simple imputation, error-correction and
+plotting capacities for genotype data. The @code{r-abhgenotyper} package is
+supposed to serve as an intermediate but independent analysis tool between the
+@code{TASSEL GBS} pipeline and the @code{r-qtl} package. The @code{r-abhgenotyper}
+provides functionalities not found in either @code{TASSEL} or @code{r-qtl} in
+addition to visualization of genotypes as \"graphical genotypes\". Plotting is
+based on @code{r-ggplot2}.")
+ (license license:gpl3)))
--
2.17.1
^ permalink raw reply related [flat|nested] 2+ messages in thread
* bug#32623: [PATCH] gnu: Add r-abhgenotyper.
2018-09-03 13:45 [bug#32623] [PATCH] gnu: Add r-abhgenotyper pimi
@ 2018-09-13 17:14 ` Ricardo Wurmus
0 siblings, 0 replies; 2+ messages in thread
From: Ricardo Wurmus @ 2018-09-13 17:14 UTC (permalink / raw)
To: 32623-done
I fixed the description and the commit message and pushed it to the
“master” branch with commit 1efcd0f1ea980472659805d91a2bb486b4136f81.
Thanks!
--
Ricardo
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2018-09-03 13:45 [bug#32623] [PATCH] gnu: Add r-abhgenotyper pimi
2018-09-13 17:14 ` bug#32623: " Ricardo Wurmus
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