* [bug#29958] [PATCH] gnu: Add python2-mmtk.
@ 2018-01-02 19:04 Konrad Hinsen
2018-01-04 17:47 ` Leo Famulari
0 siblings, 1 reply; 5+ messages in thread
From: Konrad Hinsen @ 2018-01-02 19:04 UTC (permalink / raw)
To: 29958
* gnu/packages/python.scm (python2-mmtk): New public variable.
---
gnu/packages/python.scm | 40 ++++++++++++++++++++++++++++++++++++++++
1 file changed, 40 insertions(+)
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index 875982645..eeafe159d 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -12249,3 +12249,43 @@ physical units, automatic derivatives, ...) whereas others are more
domain-specific (e.g. netCDF and PDB support). The library is currently
not actively maintained and works only with Python 2 and NumPy < 1.9.")
(license license:cecill-c)))
+
+(define-public python2-mmtk
+ (package
+ (name "python2-mmtk")
+ (version "2.7.10")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://bitbucket.org/khinsen/"
+ "mmtk/downloads/MMTK-" version ".tar.gz"))
+ (file-name (string-append "MMTK-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1k4gsd50zja89dbzgy3aji7h4zpvbvdfrds7rxr3whqrsgcffnir"))))
+ (build-system python-build-system)
+ (native-inputs
+ `(("netcdf" ,netcdf)))
+ (propagated-inputs
+ `(("python-scientific" ,python2-scientific)
+ ("python-tkinter" ,python-2 "tk")))
+ (arguments
+ `(#:python ,python-2
+ #:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (add-before 'build 'includes-from-scientific
+ (lambda* (#:key inputs #:allow-other-keys)
+ (invoke "cp" "-r"
+ (string-append
+ (assoc-ref inputs "python-scientific")
+ "/include/python2.7/Scientific")
+ "Include/"))))))
+ (home-page "http://dirac.cnrs-orleans.fr/MMTK")
+ (synopsis "Python library for molecular simulation")
+ (description "MMTK is a library for molecular simulations with an emphasis
+on biomolecules. It provides widely used methods such as Molecular Dynamics
+and normal mode analysis, but also basic routines for implementing new methods
+for simulation and analysis. The library is currently not actively maintained
+and works only with Python 2 and NumPy < 1.9.")
+ (license license:cecill-c)))
--
2.14.3 (Apple Git-98)
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [bug#29958] [PATCH] gnu: Add python2-mmtk.
2018-01-02 19:04 [bug#29958] [PATCH] gnu: Add python2-mmtk Konrad Hinsen
@ 2018-01-04 17:47 ` Leo Famulari
2018-01-04 22:34 ` [bug#29958] [PATCH v2] " Danny Milosavljevic
0 siblings, 1 reply; 5+ messages in thread
From: Leo Famulari @ 2018-01-04 17:47 UTC (permalink / raw)
To: Konrad Hinsen; +Cc: 29958
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On Tue, Jan 02, 2018 at 08:04:53PM +0100, Konrad Hinsen wrote:
> * gnu/packages/python.scm (python2-mmtk): New public variable.
Thanks!
> + (add-before 'build 'includes-from-scientific
> + (lambda* (#:key inputs #:allow-other-keys)
> + (invoke "cp" "-r"
> + (string-append
> + (assoc-ref inputs "python-scientific")
> + "/include/python2.7/Scientific")
> + "Include/"))))))
Is it possible to make this use the copy-recursively instead of `cp`? I
did try it naively and it didn't work.
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^ permalink raw reply [flat|nested] 5+ messages in thread
* [bug#29958] [PATCH v2] gnu: Add python2-mmtk.
2018-01-04 17:47 ` Leo Famulari
@ 2018-01-04 22:34 ` Danny Milosavljevic
2018-01-05 9:24 ` Konrad Hinsen
0 siblings, 1 reply; 5+ messages in thread
From: Danny Milosavljevic @ 2018-01-04 22:34 UTC (permalink / raw)
To: 29958; +Cc: Konrad Hinsen
From: Konrad Hinsen <konrad.hinsen@fastmail.net>
* gnu/packages/python.scm (python2-mmtk): New public variable.
---
gnu/packages/python.scm | 41 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 41 insertions(+)
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index 3dde9af34..d64c9bf85 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -12249,3 +12249,44 @@ physical units, automatic derivatives, ...) whereas others are more
domain-specific (e.g. netCDF and PDB support). The library is currently
not actively maintained and works only with Python 2 and NumPy < 1.9.")
(license license:cecill-c)))
+
+(define-public python2-mmtk
+ (package
+ (name "python2-mmtk")
+ (version "2.7.10")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://bitbucket.org/khinsen/"
+ "mmtk/downloads/MMTK-" version ".tar.gz"))
+ (file-name (string-append "MMTK-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1k4gsd50zja89dbzgy3aji7h4zpvbvdfrds7rxr3whqrsgcffnir"))))
+ (build-system python-build-system)
+ (native-inputs
+ `(("netcdf" ,netcdf)))
+ (propagated-inputs
+ `(("python-scientific" ,python2-scientific)
+ ("python-tkinter" ,python-2 "tk")))
+ (arguments
+ `(#:python ,python-2
+ #:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (add-before 'build 'includes-from-scientific
+ (lambda* (#:key inputs #:allow-other-keys)
+ (mkdir-p "Include/Scientific")
+ (copy-recursively
+ (string-append
+ (assoc-ref inputs "python-scientific")
+ "/include/python2.7/Scientific")
+ "Include/Scientific"))))))
+ (home-page "http://dirac.cnrs-orleans.fr/MMTK")
+ (synopsis "Python library for molecular simulation")
+ (description "MMTK is a library for molecular simulations with an emphasis
+on biomolecules. It provides widely used methods such as Molecular Dynamics
+and normal mode analysis, but also basic routines for implementing new methods
+for simulation and analysis. The library is currently not actively maintained
+and works only with Python 2 and NumPy < 1.9.")
+ (license license:cecill-c)))
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [bug#29958] [PATCH v2] gnu: Add python2-mmtk.
2018-01-04 22:34 ` [bug#29958] [PATCH v2] " Danny Milosavljevic
@ 2018-01-05 9:24 ` Konrad Hinsen
2018-01-05 9:30 ` bug#29958: " Danny Milosavljevic
0 siblings, 1 reply; 5+ messages in thread
From: Konrad Hinsen @ 2018-01-05 9:24 UTC (permalink / raw)
To: 29958
Danny Milosavljevic <dannym@scratchpost.org> writes:
> + (modify-phases %standard-phases
> + (add-before 'build 'includes-from-scientific
> + (lambda* (#:key inputs #:allow-other-keys)
> + (mkdir-p "Include/Scientific")
> + (copy-recursively
> + (string-append
> + (assoc-ref inputs "python-scientific")
> + "/include/python2.7/Scientific")
> + "Include/Scientific"))))))
Works fine for me!
Thanks,
Konrad.
^ permalink raw reply [flat|nested] 5+ messages in thread
* bug#29958: [PATCH v2] gnu: Add python2-mmtk.
2018-01-05 9:24 ` Konrad Hinsen
@ 2018-01-05 9:30 ` Danny Milosavljevic
0 siblings, 0 replies; 5+ messages in thread
From: Danny Milosavljevic @ 2018-01-05 9:30 UTC (permalink / raw)
To: Konrad Hinsen; +Cc: 29958-done
Pushed as 42d6bffc2ff55406e75bf2f7096d4074c18cf382 to guix master!
Thanks!
^ permalink raw reply [flat|nested] 5+ messages in thread
end of thread, other threads:[~2018-01-05 9:31 UTC | newest]
Thread overview: 5+ messages (download: mbox.gz / follow: Atom feed)
-- links below jump to the message on this page --
2018-01-02 19:04 [bug#29958] [PATCH] gnu: Add python2-mmtk Konrad Hinsen
2018-01-04 17:47 ` Leo Famulari
2018-01-04 22:34 ` [bug#29958] [PATCH v2] " Danny Milosavljevic
2018-01-05 9:24 ` Konrad Hinsen
2018-01-05 9:30 ` bug#29958: " Danny Milosavljevic
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