From: Arun Isaac <arunisaac@systemreboot.net>
To: 29392@debbugs.gnu.org
Subject: [bug#29392] [PATCH 06/11] gnu: metabat: Use scons-build-system.
Date: Wed, 22 Nov 2017 15:05:02 +0530 [thread overview]
Message-ID: <20171122093507.6827-6-arunisaac@systemreboot.net> (raw)
In-Reply-To: <20171122093507.6827-1-arunisaac@systemreboot.net>
* gnu/packages/bioinformatics.scm (metabat): Switch to scons-build-system.
---
gnu/packages/bioinformatics.scm | 29 +++++++++--------------------
1 file changed, 9 insertions(+), 20 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a8d7361ff..850c7462d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8,6 +8,7 @@
;;; Copyright © 2016 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2016 Raoul Bonnal <ilpuccio.febo@gmail.com>
;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -39,6 +40,7 @@
#:use-module (guix build-system python)
#:use-module (guix build-system r)
#:use-module (guix build-system ruby)
+ #:use-module (guix build-system scons)
#:use-module (guix build-system trivial)
#:use-module (gnu packages)
#:use-module (gnu packages autotools)
@@ -3439,9 +3441,13 @@ form of assemblies or reads.")
(base32
"1hmvdalz3zj5sqqklg0l4npjdv37cv2hsdi1al9iby2ndxjs1b73"))
(patches (search-patches "metabat-fix-compilation.patch"))))
- (build-system gnu-build-system)
+ (build-system scons-build-system)
(arguments
- `(#:phases
+ `(#:scons-flags
+ (list (string-append "PREFIX=" (assoc-ref %outputs "out"))
+ (string-append "BOOST_ROOT=" (assoc-ref %build-inputs "boost")))
+ #:tests? #f ;; Tests are run during the build phase.
+ #:phases
(modify-phases %standard-phases
(add-after 'unpack 'fix-includes
(lambda _
@@ -3471,30 +3477,13 @@ form of assemblies or reads.")
"/lib'"))
;; Do not distribute README.
(("^env\\.Install\\(idir_prefix, 'README\\.md'\\)") ""))
- #t))
- (delete 'configure)
- (replace 'build
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (mkdir (assoc-ref outputs "out"))
- (zero? (system* "scons"
- (string-append
- "PREFIX="
- (assoc-ref outputs "out"))
- (string-append
- "BOOST_ROOT="
- (assoc-ref inputs "boost"))
- "install"))))
- ;; Check and install are carried out during build phase.
- (delete 'check)
- (delete 'install))))
+ #t)))))
(inputs
`(("zlib" ,zlib)
("perl" ,perl)
("samtools" ,samtools)
("htslib" ,htslib)
("boost" ,boost)))
- (native-inputs
- `(("scons" ,scons)))
(home-page "https://bitbucket.org/berkeleylab/metabat")
(synopsis
"Reconstruction of single genomes from complex microbial communities")
--
2.15.0
next prev parent reply other threads:[~2017-11-22 9:52 UTC|newest]
Thread overview: 36+ messages / expand[flat|nested] mbox.gz Atom feed top
2017-11-22 8:41 [bug#29392] [PATCH 00/11] New scons build system Arun Isaac
2017-11-22 9:34 ` [bug#29392] [PATCH 01/11] gnu: scons: Update to 3.0.1 Arun Isaac
2017-11-22 9:34 ` [bug#29392] [PATCH 02/11] build-system: Add scons-build-system Arun Isaac
2017-11-26 21:04 ` Leo Famulari
2017-11-22 9:34 ` [bug#29392] [PATCH 03/11] gnu: linuxdcpp: Use scons-build-system Arun Isaac
2017-11-22 9:35 ` [bug#29392] [PATCH 04/11] gnu: gpick: " Arun Isaac
2017-11-22 9:35 ` [bug#29392] [PATCH 05/11] gnu: serf: " Arun Isaac
2017-11-22 9:35 ` Arun Isaac [this message]
2017-11-22 9:35 ` [bug#29392] [PATCH 07/11] gnu: godot: " Arun Isaac
2017-11-22 9:35 ` [bug#29392] [PATCH 08/11] gnu: pingus: " Arun Isaac
2017-11-22 9:35 ` [bug#29392] [PATCH 09/11] gnu: klick: " Arun Isaac
2017-11-22 9:35 ` [bug#29392] [PATCH 10/11] gnu: mongodb: " Arun Isaac
2017-11-22 9:35 ` [bug#29392] [PATCH 11/11] gnu: pingus: Use HTTPS for home page Arun Isaac
2017-11-25 16:04 ` [bug#29392] [PATCH 00/11] New scons build system Leo Famulari
2017-11-25 16:05 ` Leo Famulari
2017-11-26 11:17 ` Arun Isaac
2017-11-26 1:26 ` Leo Famulari
2017-11-26 16:17 ` Ludovic Courtès
2017-11-26 18:51 ` Leo Famulari
2017-11-28 17:06 ` [bug#29392] [PATCH 00/11] Add " Arun Isaac
2017-11-28 17:06 ` [bug#29392] [PATCH 01/11] gnu: scons: Update to 3.0.1 Arun Isaac
2017-11-28 17:06 ` [bug#29392] [PATCH 02/11] build-system: Add scons-build-system Arun Isaac
2017-11-28 17:06 ` [bug#29392] [PATCH 03/11] gnu: linuxdcpp: Use scons-build-system Arun Isaac
2017-11-28 17:06 ` [bug#29392] [PATCH 04/11] gnu: gpick: " Arun Isaac
2017-11-28 17:06 ` [bug#29392] [PATCH 05/11] gnu: serf: " Arun Isaac
2017-11-28 17:06 ` [bug#29392] [PATCH 06/11] gnu: metabat: " Arun Isaac
2017-11-28 17:06 ` [bug#29392] [PATCH 07/11] gnu: godot: " Arun Isaac
2017-11-28 17:06 ` [bug#29392] [PATCH 08/11] gnu: pingus: " Arun Isaac
2017-11-28 17:06 ` [bug#29392] [PATCH 09/11] gnu: klick: " Arun Isaac
2017-11-28 17:06 ` [bug#29392] [PATCH 10/11] gnu: mongodb: " Arun Isaac
2017-11-28 17:06 ` [bug#29392] [PATCH 11/11] gnu: pingus: Use HTTPS for home page Arun Isaac
2017-11-28 21:38 ` [bug#29392] [PATCH 00/11] Add scons build system Leo Famulari
2017-11-29 8:19 ` Arun Isaac
2017-11-29 21:29 ` Leo Famulari
2017-11-30 13:40 ` bug#29392: " Arun Isaac
2017-11-30 17:05 ` [bug#29392] " Ludovic Courtès
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