From: Ricardo Wurmus <rekado@elephly.net>
To: Spencer Skylar Chan <schan12@terpmail.umd.edu>
Cc: Simon Tournier <zimon.toutoune@gmail.com>,
guix-devel@gnu.org, Kyle Andrews <kyle@posteo.net>
Subject: Re: Google Summer of Code 2023 Inquiry
Date: Thu, 23 Mar 2023 08:58:27 +0100 [thread overview]
Message-ID: <87zg81hki5.fsf@mdc-berlin.de> (raw)
In-Reply-To: <b3c568c3-ec96-e3d1-4157-8bbdf56ff83c@terpmail.umd.edu>
Hi,
Spencer Skylar Chan <schan12@terpmail.umd.edu> writes:
> One approach could be to add CWL import/export capabilities to
> GWL. Then Snakemake/GWL conversion would be a 2 step process, using
> CWL as an intermediate step:
>
> 1. Snakemake -> CWL
> 2. CWL -> GWL
This seems doable.
> However, CWL is not as expressive as Snakemake. There may be some
> details that are lost from Snakemake workflows.
>
> So a 1-step Snakemake/GWL transpiler could be interesting, as both
> Snakemake/GWL use a domain-specific language inside a general purpose
> language (Python/Guile respectively). There may be a possibility to
> achieve more "accurate" translations between workflows.
Compared to the previous approach this seems vastly more complex. It’s
one thing to *execute* Snakemake code without running it through Python,
but quite a bit more challenging to transpile Python to Scheme.
Personally, I wouldn’t know where to start. Do you have an idea
already?
--
Ricardo
next prev parent reply other threads:[~2023-03-24 22:07 UTC|newest]
Thread overview: 18+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-03-07 1:31 Google Summer of Code 2023 Inquiry Spencer Skylar Chan
2023-03-11 13:32 ` Simon Tournier
2023-03-14 10:10 ` Simon Tournier
2023-03-22 17:41 ` Spencer Skylar Chan
2023-03-22 18:19 ` Ricardo Wurmus
2023-03-22 21:44 ` Spencer Skylar Chan
2023-03-23 7:58 ` Ricardo Wurmus [this message]
2023-03-30 23:27 ` Spencer Skylar Chan
2023-03-31 0:52 ` Kyle
2023-03-24 18:59 ` Kyle
2023-03-30 23:22 ` Spencer Skylar Chan
2023-03-31 15:15 ` Kyle
2023-04-04 0:41 ` Spencer Skylar Chan
2023-04-04 6:29 ` Kyle
2023-04-04 8:59 ` Simon Tournier
2023-04-04 14:32 ` Kyle
2023-04-04 17:15 ` Simon Tournier
-- strict thread matches above, loose matches on Subject: below --
2023-03-08 2:33 Spencer Skylar Chan
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