[PATCH 1/4] gnu: Add r-ade4.

[PATCH 1/4] gnu: Add r-ade4.

[Ricardo Wurmus]

* gnu/packages/statistics.scm (r-ade4): New variable.
---
 gnu/packages/statistics.scm | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 94ebe4d..813000e 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1405,6 +1405,25 @@ diagnostic tests of convergence to the equilibrium distribution of the Markov
 chain.")
     (license license:gpl2+)))
 
+(define-public r-ade4
+  (package
+    (name "r-ade4")
+    (version "1.7-4")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "ade4" version))
+        (sha256
+          (base32
+            "17sbicash7z4b63dlrbaf8xx2pbwh62vykzvhdjs43h8jkl881y7"))))
+    (build-system r-build-system)
+    (home-page "http://pbil.univ-lyon1.fr/ADE-4")
+    (synopsis "Multivariate data analysis and graphical display")
+    (description
+     "The ade4 package contains data analysis functions to analyze ecological
+and environmental data in the framework of Euclidean exploratory methods.")
+    (license license:gpl2+)))
+
 (define-public r-xml2
   (package
     (name "r-xml2")
-- 
2.8.4

[PATCH 2/4] gnu: Add r-seqinr.

[Ricardo Wurmus]

* gnu/packages/bioinformatics.scm (r-seqinr): New variable.
---
 gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4cd90b9..294f4ee 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4386,6 +4386,30 @@ In addition, a few low-level concrete subclasses of general interest (e.g.
 S4Vectors package itself.")
     (license license:artistic2.0)))
 
+(define-public r-seqinr
+  (package
+    (name "r-seqinr")
+    (version "3.1-3")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "seqinr" version))
+        (sha256
+          (base32
+            "0bbjfwbqg74wsamb3iz01g0ssdpdpg65gh00y9xlnpk4wb990n4n"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-ade4" ,r-ade4)))
+    (inputs
+     `(("zlib" ,zlib)))
+    (home-page "http://seqinr.r-forge.r-project.org/")
+    (synopsis "Biological sequences retrieval and analysis")
+    (description
+     "This package provides tools for exploratory data analysis and data
+visualization of biological sequence (DNA and protein) data.  It also includes
+utilities for sequence data management under the ACNUC system.")
+    (license license:gpl2+)))
+
 (define-public r-iranges
   (package
     (name "r-iranges")
-- 
2.8.4

[PATCH 3/4] gnu: Add r-multitaper.

[Ricardo Wurmus]

* gnu/packages/statistics.scm (r-multitaper): New variable.
---
 gnu/packages/statistics.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 813000e..6d5ee67 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1448,6 +1448,32 @@ and environmental data in the framework of Euclidean exploratory methods.")
 files in R.  It is built on top of the libxml2 C library.")
     (license license:gpl2+)))
 
+(define-public r-multitaper
+  (package
+    (name "r-multitaper")
+    (version "1.0-11")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "multitaper" version))
+       (sha256
+        (base32
+         "1s0lmjzpyd7zmc2p1ywv5fm7qkq357p70b76gw9wjlms6d81j1n4"))))
+    (build-system r-build-system)
+    (native-inputs
+     `(("gfortran" ,gfortran)))
+    (home-page "http://github.com/wesleyburr/multitaper/")
+    (synopsis "Multitaper spectral analysis tools")
+    (description
+     "This package implements multitaper spectral estimation
+techniques using prolate spheroidal sequences (Slepians) and sine
+tapers for time series analysis.  It includes an adaptive weighted
+multitaper spectral estimate, a coherence estimate, Thomson's Harmonic
+F-test, and complex demodulation.  The Slepians sequences are
+generated efficiently using a tridiagonal matrix solution, and
+jackknifed confidence intervals are available for most estimates.")
+    (license license:gpl2+)))
+
 (define-public r-rversions
   (package
     (name "r-rversions")
-- 
2.8.4

[PATCH 4/4] gnu: Add r-domc.

[Ricardo Wurmus]

* gnu/packages/statistics.scm (r-domc): New variable.
---
 gnu/packages/statistics.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 6d5ee67..45e50b6 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2267,6 +2267,29 @@ parallel.")
 using the parallel package.")
     (license license:gpl2+)))
 
+(define-public r-domc
+  (package
+    (name "r-domc")
+    (version "1.3.4")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "doMC" version))
+       (sha256
+        (base32
+         "0y47jl6g4f83r14pj8bafdzq1phj7bxy5dwyz3k43d2rr8phk8bn"))))
+    (properties `((upstream-name . "doMC")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-foreach" ,r-foreach)
+       ("r-iterators" ,r-iterators)))
+    (home-page "http://cran.r-project.org/web/packages/doMC")
+    (synopsis "Foreach parallel adaptor for the 'parallel' package")
+    (description
+     "This package provides a parallel backend for the @code{%dopar%} function
+using the multicore functionality of the parallel package.")
+    (license license:gpl2+)))
+
 (define-public r-dt
   (package
     (name "r-dt")
-- 
2.8.4