bug#53511: guix pull command fails

bug#53511: guix pull command fails

[xdrcft56 via Bug reports for GNU Guix]

[-- Attachment #1: Type: text/plain, Size: 40347 bytes --]

Attempted to update guix on a foreign distro but received an error along with the following output:

raspbian@guix:~ $ guix pull
Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.org/git/guix.git'...
Authenticating channel 'guix', commits 9edb3f6 to 5b50e96 (1,300 new commits)...
Building from this channel:
guix https://git.savannah.gnu.org/git/guix.git 5b50e96
substitute: updating substitutes from 'https://ci.guix.gnu.org'... 100.0%
substitute: updating substitutes from 'https://ci.guix.gnu.org'... 100.0%
substitute: updating substitutes from 'https://ci.guix.gnu.org'... 100.0%
building /gnu/store/dxdg9rf9d3cjrv0r900rzpwmp80a06hy-module-import.drv...
building /gnu/store/n4iii4p1iwg8jmmw5jg78ibv3y86449z-module-import.drv...
building /gnu/store/nxa9l0sgwk67rpwqalqsgsh5yvjxnap9-module-import-compiled.drv...
building /gnu/store/j8ddymsf5nks309kg8zgjcp6ww0nc5b7-module-import-compiled.drv...
building /gnu/store/aa87z2jv4nb6qqy069nv82jbyapjii1m-compute-guix-derivation.drv...
substitute: updating substitutes from 'https://ci.guix.gnu.org'... 100.0%
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building /gnu/store/7d0rmfy2g9ja2nvqnhbr2y89jjrl5y62-module-import-compiled.drv...
building /gnu/store/ln38r6kffi3g1lxb6j0m08id8lddybj9-module-import-compiled.drv...
building /gnu/store/4r6d1prj6c4flqfzz28wff76h8lnsrfy-bash-5.1.tar.xz.drv...
building /gnu/store/yid6gm7wwnarmclbwb93nyxyvwbhkph9-binutils-2.37.tar.xz.drv...
building /gnu/store/74ndj840imi2jq2y5p20cdgimkq5h97a-binutils-bootstrap-0.drv...
building /gnu/store/7x3fkqfzmp7j8hphljfslr8ilam62n55-coreutils-8.32.tar.xz.drv...
building /gnu/store/rmbddh2j2h6aigvy96dhyb3sam0w5x97-diffutils-3.8.tar.xz.drv...
building /gnu/store/bj31x7yj6mccmxcn8dys56r12ch64v5b-findutils-4.8.0.tar.xz.drv...
building /gnu/store/l64vz8bpbw8p2nwn49qf5m5za767hai9-gcc-10.3.0.tar.xz.drv...
building /gnu/store/r8r12q8sh958dcs7cy4mldgylz768ly5-glibc-2.33.tar.xz.drv...
building /gnu/store/z1hy1ysng9hl7q4r36jwqyy523hsry9f-gmp-6.0.0a.tar.xz.drv...
building /gnu/store/3fvcrf1mnndixv4mr3gfap078mfvc0nq-grep-3.6.tar.xz.drv...
building /gnu/store/wyqn7vxqaj09i22p54b4djz72kjzlmlv-guile-3.0.7.tar.xz.drv...
building /gnu/store/3ayj6nrnxi14jakw11p9gcwj4r0lbsjb-ld-wrapper-boot0-0.drv...
building /gnu/store/vs7w7zndnh9smrryyad9nwhpayv64gd4-libffi-3.3.tar.xz.drv...
building /gnu/store/qizlwjqhhfx1nwk1ifl0cbhfdcrjy7ix-make-4.3.tar.xz.drv...
building /gnu/store/rjqqq3z7bsj1ad84im3qb21np30fy57s-patch-2.7.6.tar.xz.drv...
building /gnu/store/nf091sj7jk0prk08xczi5h44lc38qb93-make-boot0-4.3.drv...
building /gnu/store/scaym8abc3dnd391jfr9wsfmjq4fykms-perl-5.34.0.tar.xz.drv...
building /gnu/store/2r6qw5fk3f4lg334wd3jiwvzvssh4rv2-gettext-boot0-0.19.8.1.drv...
building /gnu/store/34rvlhklld11r78pmk758280lvdpygi5-linux-libre-headers-5.10.35.drv...
building /gnu/store/98hcmj1xgq47x3ccsd2g279k9xa726d1-sed-4.8.tar.xz.drv...
building /gnu/store/nbjqy6pryak10w4jqlfsm3b0i6ngw6cb-glibc-intermediate-2.33.drv...
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building /gnu/store/kv452ysf4m5z2dlva8l5znpkssxijc62-gcc-cross-boot0-wrapped-10.3.0.drv...
building /gnu/store/k817dr1wn36gjm1dgn65dl8zdxaw1l39-bash-static-5.1.8.drv...
building /gnu/store/xma11m4cfxy5ad4qniyb1jnz0qvi3kr0-glibc-2.33.drv...
building /gnu/store/c1pbacf5s90nlaz3apa3fgzcyql6bs2c-gcc-cross-boot0-wrapped-10.3.0.drv...
building /gnu/store/l8nj0dlwnw2cl6sc9gd5c7dbrypxz1rj-binutils-2.37.drv...
building /gnu/store/7m0vnxbigrn8kiv0hih89aiyhky8w9nd-libstdc++-10.3.0.drv...
building /gnu/store/p90379hrdky1ki03d0pmj8w6hvak4d01-ld-wrapper-boot3-0.drv...
building /gnu/store/kjfbwd9kxlnb3by2f4vpihwzazlbzlyl-zlib-1.2.11.drv...
building /gnu/store/ajmmafhpmi83ssxg860wd93z9yhhhk5w-gcc-10.3.0.drv...
/ 'build' phasebuilder for `/gnu/store/ajmmafhpmi83ssxg860wd93z9yhhhk5w-gcc-10.3.0.drv' failed with exit code 1
build of /gnu/store/ajmmafhpmi83ssxg860wd93z9yhhhk5w-gcc-10.3.0.drv failed
Backtrace:
View build log at '/var/log/guix/drvs/aj/mmafhpmi83ssxg860wd93z9yhhhk5w-gcc-10.3.0.drv.bz2'.
13 (primitive-load "/gnu/store/rsfj0ksp0jxw3cqkhyjjv0bffbiazg1m-compute-guix-derivation")
In ice-9/eval.scm:
155:9 12 (_ _)
159:9 11 (_ #(#(#(#(#(#(#(#(#(#(#(#(#(#(#(#(#<directory (guile-u?> ?) ?) ?) ?) ?) ?) ?) ?) ?) ?) ?) ?) ?) ?) ?) ?))
In ice-9/boot-9.scm:
152:2 10 (with-fluid* _ _ _)
152:2 9 (with-fluid* _ _ _)
In ./guix/store.scm:
2123:24 8 (run-with-store #<store-connection 256.99 b3685cf8> _ #:guile-for-build _ #:system _ #:target _)
1960:8 7 (_ _)
In ./guix/gexp.scm:
296:22 6 (_ _)
1180:2 5 (_ _)
1046:2 4 (_ _)
892:4 3 (_ _)
In ./guix/store.scm:
2008:12 2 (_ #<store-connection 256.99 b3685cf8>)
1406:5 1 (map/accumulate-builds #<store-connection 256.99 b3685cf8> #<procedure b2326d38 at ./guix/store.scm:20?> ?)
1421:15 0 (_ #<store-connection 256.99 b3685cf8> _ _)

./guix/store.scm:1421:15: ERROR:
1. &store-protocol-error:
message: "build of `/gnu/store/2w4scvc76kjx68ly67n2gkpnp945m4jg-git-minimal-2.34.0.drv' failed"
status: 100
-guix pull: error: You found a bug: the program '/gnu/store/rsfj0ksp0jxw3cqkhyjjv0bffbiazg1m-compute-guix-derivation'
failed to compute the derivation for Guix (version: "5b50e9634a83eb8627906c6cd6a80e0b68df9ebd"; system: "armhf-linux";
host version: "1.3.0"; pull-version: 1).
Please report the COMPLETE output above by email to <bug-guix@gnu.org>.

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bug#53511: guix pull command fails

[Maxime Devos]

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xdrcft56 via Bug reports for GNU Guix schreef op ma 24-01-2022 om 18:28
[+0000]:
> / 'build' phasebuilder for
> `/gnu/store/ajmmafhpmi83ssxg860wd93z9yhhhk5w-gcc-10.3.0.drv' failed
> with exit code 1
> build of /gnu/store/ajmmafhpmi83ssxg860wd93z9yhhhk5w-gcc-10.3.0.drv
> failed
> Backtrace:
> View build log at
> '/var/log/guix/drvs/aj/mmafhpmi83ssxg860wd93z9yhhhk5w-gcc-
> 10.3.0.drv.bz2'.
>           13 (primitive-load
> "/gnu/store/rsfj0ksp0jxw3cqkhyjjv0bffbiazg1m-compute-guix-
> derivation")

To investigate the issue, this log file is required.

Greetings,
Maxime.

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bug#53511: guix pull command fails

[xdrcft56 via Bug reports for GNU Guix]

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Thank you.  I've attached the requested log file (/var/log/guix/drvs/aj/mmafhpmi83ssxg860wd93z9yhhhk5w-gcc-10.3.0.drv.bz2).


‐‐‐‐‐‐‐ Original Message ‐‐‐‐‐‐‐

On Monday, January 24th, 2022 at 4:25 PM, Maxime Devos <maximedevos@telenet.be> wrote:

> xdrcft56 via Bug reports for GNU Guix schreef op ma 24-01-2022 om 18:28
>
> [+0000]:
>
> > / 'build' phasebuilder for
> >
> > `/gnu/store/ajmmafhpmi83ssxg860wd93z9yhhhk5w-gcc-10.3.0.drv' failed
> >
> > with exit code 1
> >
> > build of /gnu/store/ajmmafhpmi83ssxg860wd93z9yhhhk5w-gcc-10.3.0.drv
> >
> > failed
> >
> > Backtrace:
> >
> > View build log at
> >
> > '/var/log/guix/drvs/aj/mmafhpmi83ssxg860wd93z9yhhhk5w-gcc-
> >
> > 10.3.0.drv.bz2'.
> >
> >           13 (primitive-load
> >
> > "/gnu/store/rsfj0ksp0jxw3cqkhyjjv0bffbiazg1m-compute-guix-
> >
> > derivation")
>
> To investigate the issue, this log file is required.
>
> Greetings,
>
> Maxime.

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bug#53511: guix pull command fails

[Maxime Devos]

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xdrcft56 schreef op ma 24-01-2022 om 23:35 [+0000]:
> Thank you.  I've attached the requested log file (/var/log/guix/drvs/aj/mmafhpmi83ssxg860wd93z9yhhhk5w-gcc-10.3.0.drv.bz2).

‘collect2: fatal error: ld terminated with signal 9 [Killed]’

this could indicate an out-of-memory situation, which Guix cannot
really do anything about.   If it is a OOM, the dmesg should contain a
message about it (I don't know exactly how it looks like).  A future
OOM can be avoided by closing some memory intensive applications (e.g.
most web browsers) and reducing the number of cores used for building:
"guix pull --cores=2 --max-jobs=1".

In principle, it could be something else though.  Can you reproduce
with "guix pull --cores=2 --max-jobs=1"?

Also, I'm noticing you are building everything from source.
To avoid having to build things (and hence reduce the chance of
an OOM) (and save energy), I recommend enabling and authorising
substitutes.

Greetings,
Maxime.

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bug#53511: guix pull command fails

[xdrcft56 via Bug reports for GNU Guix]

I attempted the "guix pull --cores=2 --max-jobs=1" command as root and received the following output and error:

Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.org/git/guix.git'...
guix pull: error: Git error: error inflating zlib stream

I also ran "guix archive --authorize < ~root/.config/guix/current/share/guix/ci.guix.gnu.org.pub" in order enable and authorize a substitute but received the same error as above upon running "guix pull --cores=2 --max-jobs=1" subsequently.

Finally, I reviewed dmesg and saw no change during the course of executing these commands.

‐‐‐‐‐‐‐ Original Message ‐‐‐‐‐‐‐

On Tuesday, January 25th, 2022 at 2:59 AM, Maxime Devos <maximedevos@telenet.be> wrote:

> xdrcft56 schreef op ma 24-01-2022 om 23:35 [+0000]:
>
> > Thank you. I've attached the requested log file (/var/log/guix/drvs/aj/mmafhpmi83ssxg860wd93z9yhhhk5w-gcc-10.3.0.drv.bz2).
>
> ‘collect2: fatal error: ld terminated with signal 9 [Killed]’
>
> this could indicate an out-of-memory situation, which Guix cannot
>
> really do anything about. If it is a OOM, the dmesg should contain a
>
> message about it (I don't know exactly how it looks like). A future
>
> OOM can be avoided by closing some memory intensive applications (e.g.
>
> most web browsers) and reducing the number of cores used for building:
>
> "guix pull --cores=2 --max-jobs=1".
>
> In principle, it could be something else though. Can you reproduce
>
> with "guix pull --cores=2 --max-jobs=1"?
>
> Also, I'm noticing you are building everything from source.
>
> To avoid having to build things (and hence reduce the chance of
>
> an OOM) (and save energy), I recommend enabling and authorising
>
> substitutes.
>
> Greetings,
>
> Maxime.

bug#53511: guix pull command fails

[xdrcft56 via Bug reports for GNU Guix]

After debugging this a bit deeper, I see that libgit2.so.1.1.0 is generating the error message "error inflating zlib stream".  Which leads me to suspect that the reason I can't "guix pull" is related to guile-git.

I've already reinstalled guix and the error persists.

Is there a way to update guile-git/libgit2.so.1.1.0 without having the ability to "guix pull && guix package -u"?

‐‐‐‐‐‐‐ Original Message ‐‐‐‐‐‐‐

On Tuesday, January 25th, 2022 at 1:32 PM, xdrcft56 <xdrcft56@protonmail.com> wrote:

> I attempted the "guix pull --cores=2 --max-jobs=1" command as root and received the following output and error:
>
> Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.org/git/guix.git'...
>
> guix pull: error: Git error: error inflating zlib stream
>
> I also ran "guix archive --authorize < ~root/.config/guix/current/share/guix/ci.guix.gnu.org.pub" in order enable and authorize a substitute but received the same error as above upon running "guix pull --cores=2 --max-jobs=1" subsequently.
>
> Finally, I reviewed dmesg and saw no change during the course of executing these commands.
>
> ‐‐‐‐‐‐‐ Original Message ‐‐‐‐‐‐‐
>
> On Tuesday, January 25th, 2022 at 2:59 AM, Maxime Devos maximedevos@telenet.be wrote:
>
> > xdrcft56 schreef op ma 24-01-2022 om 23:35 [+0000]:
> >
> > > Thank you. I've attached the requested log file (/var/log/guix/drvs/aj/mmafhpmi83ssxg860wd93z9yhhhk5w-gcc-10.3.0.drv.bz2).
> >
> > ‘collect2: fatal error: ld terminated with signal 9 [Killed]’
> >
> > this could indicate an out-of-memory situation, which Guix cannot
> >
> > really do anything about. If it is a OOM, the dmesg should contain a
> >
> > message about it (I don't know exactly how it looks like). A future
> >
> > OOM can be avoided by closing some memory intensive applications (e.g.
> >
> > most web browsers) and reducing the number of cores used for building:
> >
> > "guix pull --cores=2 --max-jobs=1".
> >
> > In principle, it could be something else though. Can you reproduce
> >
> > with "guix pull --cores=2 --max-jobs=1"?
> >
> > Also, I'm noticing you are building everything from source.
> >
> > To avoid having to build things (and hence reduce the chance of
> >
> > an OOM) (and save energy), I recommend enabling and authorising
> >
> > substitutes.
> >
> > Greetings,
> >
> > Maxime.