* bug#31843: guix pull corrupted current guix
@ 2018-06-15 11:25 Julien Lepiller
2018-06-15 15:27 ` Ludovic Courtès
0 siblings, 1 reply; 3+ messages in thread
From: Julien Lepiller @ 2018-06-15 11:25 UTC (permalink / raw)
To: 31843
[-- Attachment #1: Type: text/plain, Size: 1487 bytes --]
Hi, running guix pull this morning corrupted my current guix command.
I am running on guixsd. Because I don't have a lot of memory, I sent a
generation of .config/guix/current to the server with:
guix archive --export -r `readlink -f .config/guix/current` | ssh
machine guix archive --import
Then, I created a link from /var/guix/gcroots to the
.config/guix/current, and from that to the store item that was
transferred.
This morning, I tried to run guix pull to see how far it would go (and
if I could download some parts from hydra or berlin). As expected, it
ran out of memory, but left my store in a state where the guix command
linked to from .config/guix/current only contains garbage. Attached is
the output of "guix pull --cores=1" on that machine that lead to the
bug, and the new content of the guix command.
The corrupted file is from a store item that was present (and valid)
before I ran guix pull, so I thought it was impossible for guix to
modify it.
I think a fix is to remove .config/guix/current, run an older version of
guix to try and repair the store with guix gc, and send the guix package
from my other machine again. I haven't tried that yet, as my broken
machine still mostly works, although I doubt it can boot now. Since I
didn't try to fix anything, I can give more details if you want. The
guix I used to pull is from commit
85d79a79e4b721e24cdfb11a90beef6d566c499a, and the pulled commit is
0017e55f892828f7a4d29a50f06e5146270ab8cb.
[-- Attachment #2: guix-command --]
[-- Type: text/plain, Size: 2352 bytes --]
s�ra�onn an sainmh�ni� ar `%T' an ceann coitianta
%B: rabhadh: ceann coitianta n�os m� anseo
%B: rabhadh: t� tuilleadh tagairt� do `%T' gan sainmh�ni� th�os
%B: rabhadh: ilchoitianta `%T'
%B: rabhadh: ceann coitianta roimhe anseo
%B: rabhadh: ceann coitianta n�os l� anseo
%B: rabhadh: tagairt do `%T' gan sainmh�ni�
%C: N� f�idir �bhar an rann�in a fh�il - eisceacht uathiomp�rt�la
%C: n� f�idir athr�g '%T' a uathiomp�rt�il. L�igh an doicim�ad� "ld" ar --enable-auto-import chun na mionsonra� a fh�il.
%C: rabhadh: tagairt do `%T' gan sainmh�ni�
%D: an ch�ad mh�ni� anseo
%D: rabhadh: t� tuilleadh tagairt� do `%T' gan sainmh�ni� th�os
%F%B: n�orbh fh�idir na siombail� a l�amh: %E
%F%B: comhad gan aimsi�: %E
%F%B: theip ar dh�nadh deiridh: %E
%F%B: n� r�ad � ball %B sa chartlann
%F%P: %s (%s): N�l a leith�id de chomhad: %E
%F%P: %s: N�l a leith�id de chomhad: %E
%F%P: iarracht ar nasc statach de r�ad dinimici�il `%s' a dh�anamh
%F%P: theip ar bfd_hash_lookup: %E
%F%P: theip ar bfd_hash_table_init: %E
%F%P: theip ar bfd_record_phdr: %E
%F%P: n� f�idir ainm roinnte a chruth� ar rann�n %s
%F%P: n� f�idir %s a aimsi�
%F%P: n� f�idir %s a aimsi� i %s
%F%P: n� f�idir oibr�ochta� PE a dh�anamh ar aschomhad neamh-PE '%B'.
%F%P: theip ar chl�n�il an rann�in: %E
%F%P: theip ar an nascadh deiridh: %E
%F%P: earr�id inmhe�nach %s %d
%F%P: sprioc neamhbhail� BFD `%s'
%F%P: r�iteas neamhbhail� sonra�
%F%P: r�iteas neamhbhail� athshuite
%F%P: st�l anaithnid d�choscartha `%s'%F%S %% le nialas
%F%S / le nialas
%F%S n�l sannadh don �iritheoir su�omhanna bail� taobh amuigh de RANN�N
N� f�idir le %F%S sannadh a shol�thar d'�iritheoir su�omhanna
%F%S n� f�idir an t-�iritheoir su�omhanna a bhogadh ar ais (� %V go %V)
%F%S sannadh neamhbhail� ar �iritheoir su�omhanna
%F%S slonn inathraitheach do %s
%F%S: slonn seolta tagartha ar aghaidh n� slonn inathraitheach do rann�n %s
%F%S: slonn inathraitheach do %s
%F%S: rinneadh tagairt do r�igi�n CUIMHNE `%s' gan sainmh�ni� i slonn
%F%S: rinneadh tagairt do rann�n `%s' gan sainmh�ni� i slonn
%F%S: rinneadh tagairt do shiombail `%s' gan sainmh�ni� i slonn
%F%S: rinneadh t
[-- Attachment #3: guix-pull.log --]
[-- Type: text/plain, Size: 17526 bytes --]
substitute: mise à jour de la liste des substituts depuis « https://berlin.guixsd.org »... 100.0%
Téléchargement de « https://mirror.hydra.gnu.org/guix/nar/gzip/35bj4v3skwwdmydsndz1hj14d7p95qcb-le-certs-0 »...
le-certs-0 4KiB 678KiB/s 00:00 [##################] 100.0%
Mise à jour depuis le dépôt Git « https://git.savannah.gnu.org/git/guix.git »...
Construction depuis le commit Git « 0017e55f892828f7a4d29a50f06e5146270ab8cb »...
substitute: mise à jour de la liste des substituts depuis « https://berlin.guixsd.org »... 100.0%
substitute: mise à jour de la liste des substituts depuis « https://mirror.hydra.gnu.org »... 100.0%
Les dérivations suivantes seront compilées :
/gnu/store/w10h032m7crrri26phj7c92l4qyy4cfl-compute-guix-derivation.drv
/gnu/store/1wk5gca51dy45fxvjhci9a3vh3hdk7b4-config.scm.drv
/gnu/store/83qmaffwx997kq7xb3qzanhnq4cm3zyx-module-import.drv
/gnu/store/8rzprc8w88y8x8sg8jr0mh9z0d4i513l-module-import-compiled.drv
12,2 Mo seront téléchargés :
/gnu/store/6mfd4f8gy11rgn2xk00cnslmrslg9w7h-guile-2.2.3
/gnu/store/ckpykvmgbrwq5ga3psrx0kh2rf0bgz43-gmp-6.1.2
/gnu/store/cvkza46yilif589vh2wcb77jsfd4pnz8-pkg-config-0.29.2
/gnu/store/d9d6fyxgxrq818bjfcw50vh23jz3jx8f-libatomic-ops-7.6.4
/gnu/store/fln814wkzzf7lqjvkaaxkhi6k52gnbg2-libffi-3.2.1
/gnu/store/fxg30w3bifq6rqzynlvnlipr36q7rgzg-libunistring-0.9.9
/gnu/store/k6pib0k4sv8f5wj7wsbfy433ffydd1i1-libgc-7.6.4
/gnu/store/qs9nkvb04s42kc85h6pzm6z2ayma1zqh-libltdl-2.4.6
Téléchargement de « https://berlin.guixsd.org/nar/gzip/d9d6fyxgxrq818bjfcw50vh23jz3jx8f-libatomic-ops-7.6.4 »...
libatomic-ops-7.6.4 89KiB 1.2MiB/s 00:00 [##################] 100.0%
Téléchargement de « https://berlin.guixsd.org/nar/gzip/ckpykvmgbrwq5ga3psrx0kh2rf0bgz43-gmp-6.1.2 »...
gmp-6.1.2 873KiB 3.8MiB/s 00:00 [##################] 100.0%
Téléchargement de « https://berlin.guixsd.org/nar/gzip/fln814wkzzf7lqjvkaaxkhi6k52gnbg2-libffi-3.2.1 »...
libffi-3.2.1 59KiB 1.5MiB/s 00:00 [##################] 100.0%
Téléchargement de « https://berlin.guixsd.org/nar/gzip/k6pib0k4sv8f5wj7wsbfy433ffydd1i1-libgc-7.6.4 »...
libgc-7.6.4 398KiB 3.0MiB/s 00:00 [##################] 100.0%
Téléchargement de « https://berlin.guixsd.org/nar/gzip/qs9nkvb04s42kc85h6pzm6z2ayma1zqh-libltdl-2.4.6 »...
libltdl-2.4.6 52KiB 1.4MiB/s 00:00 [##################] 100.0%
Téléchargement de « https://berlin.guixsd.org/nar/gzip/fxg30w3bifq6rqzynlvnlipr36q7rgzg-libunistring-0.9.9 »...
libunistring-0.9.9 1.4MiB 5.0MiB/s 00:00 [##################] 100.0%
Téléchargement de « https://berlin.guixsd.org/nar/gzip/cvkza46yilif589vh2wcb77jsfd4pnz8-pkg-config-0.29.2 »...
pkg-config-0.29.2 499KiB 3.2MiB/s 00:00 [##################] 100.0%
Téléchargement de « https://berlin.guixsd.org/nar/gzip/6mfd4f8gy11rgn2xk00cnslmrslg9w7h-guile-2.2.3 »...
guile-2.2.3 8.3MiB 5.3MiB/s 00:02 [##################] 100.0%
[ 1/39] Compiling './gnu/packages/bootstrap.scm'...
[ 2/39] Compiling './gnu/packages.scm'...
[ 3/39] Compiling './guix/base16.scm'...
[ 4/39] Compiling './guix/base32.scm'...
[ 5/39] Compiling './guix/base64.scm'...
[ 6/39] Compiling './guix/build/compile.scm'...
[ 7/39] Compiling './guix/build/download.scm'...
[ 8/39] Compiling './guix/build/syscalls.scm'...
[ 9/39] Compiling './guix/build/utils.scm'...
[10/39] Compiling './guix/build-system/gnu.scm'...
[11/39] Compiling './guix/build-system/trivial.scm'...
[12/39] Compiling './guix/build-system.scm'...
[13/39] Compiling './guix/combinators.scm'...
[14/39] Compiling './guix/config.scm'...
[15/39] Compiling './guix/derivations.scm'...
[16/39] Compiling './guix/discovery.scm'...
[17/39] Compiling './guix/download.scm'...
[18/39] Compiling './guix/ftp-client.scm'...
[19/39] Compiling './guix/gcrypt.scm'...
[20/39] Compiling './guix/gexp.scm'...
[21/39] Compiling './guix/grafts.scm'...
[22/39] Compiling './guix/hash.scm'...
[23/39] Compiling './guix/i18n.scm'...
[24/39] Compiling './guix/licenses.scm'...
[25/39] Compiling './guix/memoization.scm'...
[26/39] Compiling './guix/modules.scm'...
[27/39] Compiling './guix/monads.scm'...
[28/39] Compiling './guix/packages.scm'...
[29/39] Compiling './guix/profiles.scm'...
[30/39] Compiling './guix/profiling.scm'...
[31/39] Compiling './guix/progress.scm'...
[32/39] Compiling './guix/records.scm'...
[33/39] Compiling './guix/search-paths.scm'...
[34/39] Compiling './guix/self.scm'...
[35/39] Compiling './guix/serialization.scm'...
[36/39] Compiling './guix/sets.scm'...
[37/39] Compiling './guix/store.scm'...
[38/39] Compiling './guix/ui.scm'...
;;; Failed to autoload make-session in (gnutls):
;;; missing interface for module (gnutls)
;;; Failed to autoload connection-end/client in (gnutls):
;;; missing interface for module (gnutls)
;;; ./gnu/packages.scm:92:33: warning: non-literal format string
;;; ./gnu/packages.scm:108:16: warning: non-literal format string
;;; Failed to autoload make-session in (gnutls):
;;; missing interface for module (gnutls)
;;; Failed to autoload connection-end/client in (gnutls):
;;; missing interface for module (gnutls)
;;; Failed to autoload make-session in (gnutls):
;;; missing interface for module (gnutls)
;;; Failed to autoload make-session in (gnutls):
;;; missing interface for module (gnutls)
;;; Failed to autoload connection-end/client in (gnutls):
;;; missing interface for module (gnutls)
;;; ./guix/build/download.scm:176:4: warning: possibly unbound variable `set-certificate-credentials-x509-trust-data!'
;;; ./guix/build/download.scm:182:15: warning: possibly unbound variable `make-certificate-credentials'
;;; ./guix/build/download.scm:191:20: warning: possibly unbound variable `x509-certificate-format/pem'
;;; ./guix/build/download.scm:199:2: warning: possibly unbound variable `session-peer-certificate-chain'
;;; ./guix/build/download.scm:201:5: warning: possibly unbound variable `import-x509-certificate'
;;; ./guix/build/download.scm:201:5: warning: possibly unbound variable `x509-certificate-format/der'
;;; ./guix/build/download.scm:210:10: warning: possibly unbound variable `x509-certificate-matches-hostname?'
;;; ./guix/build/download.scm:215:2: warning: possibly unbound variable `peer-certificate-status'
;;; ./guix/build/download.scm:234:13: warning: possibly unbound variable `certificate-status->string'
;;; ./guix/build/download.scm:229:20: warning: possibly unbound variable `x509-certificate-dn'
;;; ./guix/build/download.scm:246:18: warning: possibly unbound variable `make-session'
;;; ./guix/build/download.scm:246:18: warning: possibly unbound variable `connection-end/client'
;;; ./guix/build/download.scm:255:8: warning: possibly unbound variable `set-session-server-name!'
;;; ./guix/build/download.scm:255:8: warning: possibly unbound variable `server-name-type/dns'
;;; ./guix/build/download.scm:259:4: warning: possibly unbound variable `set-session-transport-fd!'
;;; ./guix/build/download.scm:260:4: warning: possibly unbound variable `set-session-default-priority!'
;;; ./guix/build/download.scm:266:4: warning: possibly unbound variable `set-session-priorities!'
;;; ./guix/build/download.scm:268:4: warning: possibly unbound variable `set-session-credentials!'
;;; ./guix/build/download.scm:272:34: warning: possibly unbound variable `make-certificate-credentials'
;;; ./guix/build/download.scm:280:8: warning: possibly unbound variable `handshake'
;;; ./guix/build/download.scm:282:15: warning: possibly unbound variable `error/warning-alert-received'
;;; ./guix/build/download.scm:287:23: warning: possibly unbound variable `alert-description->string'
;;; ./guix/build/download.scm:287:50: warning: possibly unbound variable `alert-get'
;;; ./guix/build/download.scm:288:15: warning: possibly unbound variable `handshake'
;;; ./guix/build/download.scm:303:18: warning: possibly unbound variable `session-record-port'
;;; Failed to autoload make-session in (gnutls):
;;; missing interface for module (gnutls)
;;; Failed to autoload make-session in (gnutls):
;;; missing interface for module (gnutls)
;;; Failed to autoload connection-end/client in (gnutls):
;;; missing interface for module (gnutls)
;;; ./guix/discovery.scm:89:22: warning: non-literal format string
;;; ./guix/ui.scm:169:5: warning: non-literal format string
;;; ./guix/ui.scm:314:2: warning: non-literal format string
;;; ./guix/ui.scm:332:22: warning: non-literal format string
;;; ./guix/ui.scm:360:13: warning: non-literal format string
;;; ./guix/ui.scm:353:7: warning: non-literal format string
;;; ./guix/ui.scm:348:11: warning: non-literal format string
;;; ./guix/ui.scm:384:7: warning: non-literal format string
;;; ./guix/ui.scm:468:2[39/39] Compiling './guix/utils.scm'...
: warning: non-literal format string
;;; ./guix/ui.scm:470:2: warning: non-literal format string
;;; ./guix/ui.scm:578:22: warning: non-literal format string
;;; ./guix/ui.scm:581:22: warning: non-literal format string
;;; ./guix/ui.scm:691:13: warning: non-literal format string
;;; ./guix/ui.scm:866:14: warning: non-literal format string
;;; ./guix/ui.scm:886:14: warning: non-literal format string
;;; ./guix/ui.scm:1390:18: warning: non-literal format string
;;; ./guix/ui.scm:1405:10: warning: non-literal format string
;;; ./guix/ui.scm:1448:2: warning: non-literal format string
;;; ./guix/ui.scm:1464:2: warning: non-literal format string
;;; ./guix/ui.scm:1494:2: warning: non-literal format string
;;; ./guix/ui.scm:1523:2: warning: non-literal format string
;;; ./guix/ui.scm:1526:2: warning: non-literal format string
;;; ./guix/ui.scm:1545:8: warning: non-literal format string
;;; ./guix/ui.scm:1583:5: warning: non-literal format string
;;; ./guix/ui.scm:1575:5: warning: non-literal format string
substitute: updating list of substitutes from 'https://berlin.guixsd.org'... 100.0%
substitute: updating list of substitutes from 'https://berlin.guixsd.org'... 100.0%
substitute: updating list of substitutes from 'https://berlin.guixsd.org'... 100.0%%
substitute: updating list of substitutes from 'https://berlin.guixsd.org'... 100.0%
/
substitute: mise à jour de la liste des substituts depuis « https://berlin.guixsd.org »... 100.0%
substitute: mise à jour de la liste des substituts depuis « https://mirror.hydra.gnu.org »... 100.0%
Les dérivations suivantes seront compilées :
/gnu/store/7m2lp4gky0rf1xjl11k6s7a77ra58vzv-guix-0017e55f8.drv
/gnu/store/wcbjf8s8bbljncksz6j15xyrkddsa70y-guix-system-source.drv
/gnu/store/si9sj7iv9js4gbhnlymh9n9x2j0zlavn-guix-packages-source.drv
/gnu/store/rmia7n5l3inskzg2xcy7aq8fz7p2bffa-config.scm.drv
/gnu/store/paksg26zb1wza0rwqizlz1h922glfpyv-guix-config-source.drv
/gnu/store/f67ii7dcwc007b489aymnnb8lw6bf77r-guix-cli-source.drv
/gnu/store/j15v3z067gfcg7k02wj5aijdlih32wdr-config.scm.drv
/gnu/store/d9d740i4drb8rffmqzmdc8z7i1gp8gpc-guix-core-source.drv
/gnu/store/6jpfwl8n5n5rk7zjwhm1309q825acnif-guix-packages-base-source.drv
/gnu/store/1pfgrml3cwvdw25i3rgzzjw9wlvq2gq4-guix-extra-source.drv
/gnu/store/0zyvas2zdckw65pvmy8qrjfi5kf4jc48-guix-packages.drv
/gnu/store/6wr89i3fj8dixi70y7jgh2ll67c10kdf-guix-extra.drv
/gnu/store/8avxjlw1dcrhpxbv4j0pphavxsniprbl-guix-system.drv
/gnu/store/cr9fq5ias5gf4yvq3lc1mylns8kpk4q6-guix-core.drv
/gnu/store/dsfp2wynixnidyrn6k6yby5f7srxmmjh-guix-config.drv
/gnu/store/jqfv830m6bfwpmyf4b945lnvq5mkyy7b-guix-packages-base.drv
/gnu/store/xk3d6l1i7j02rgnnx39f881nc73fl26y-guix-cli.drv
/gnu/store/bhhgdzf4711pqaackcryvrncfw6dlajf-guix-0017e55f8-modules.drv
/gnu/store/s691kw8b7jn0k4si7scc1vb5zvlq6jg2-guix-command.drv
5,0 Mo seront téléchargés :
/gnu/store/2rfa6337gb84bx4f2jzn5h9wfi3lhjik-guile-git-0.0-6.36f93c1
/gnu/store/5lmr2x0cl45x0f15hsbaw4y560gnwry3-guile-ssh-0.11.2
/gnu/store/j1qxwjjpp1sil57j1z3x63x24dppa7d5-module-import
/gnu/store/f7is4225529walkny9kh12isi0zn99i5-module-import-compiled
/gnu/store/hc5cak3fj0dijbm86kpz2asl7ld4gf8y-libgcrypt-1.8.3
/gnu/store/n6wbbnaxb2lw29swzmvg5z7znl7kjl3a-module-import
/gnu/store/xj23hgmnd4g0m9dvasy09212x6ywqgwh-module-import-compiled
/gnu/store/g5vv3ay859vhgvpm28b0vwdns799k81c-guix-manual
/gnu/store/wq4x3c43j8y96vn6k8h5jnd4jz6f2zvc-guix-daemon-0.14.0-12.77a1aac
/gnu/store/gqqy05yadvg7afiaafymw2x4899hgr3c-libgit2-0.26.0
/gnu/store/zbbkwn1ilis6fkavs3lnpklys72khdlx-libssh-0.7.5-0.239d0f7
Téléchargement de « https://berlin.guixsd.org/nar/gzip/g5vv3ay859vhgvpm28b0vwdns799k81c-guix-manual »...
guix-manual 2.1MiB 5.0MiB/s 00:00 [##################] 100.0%
Téléchargement de « https://berlin.guixsd.org/nar/gzip/hc5cak3fj0dijbm86kpz2asl7ld4gf8y-libgcrypt-1.8.3 »...
libgcrypt-1.8.3 611KiB 3.2MiB/s 00:00 [##################] 100.0%
Téléchargement de « https://berlin.guixsd.org/nar/gzip/j1qxwjjpp1sil57j1z3x63x24dppa7d5-module-import »...
module-import 416B 70KiB/s 00:00 [##################] 100.0%
Téléchargement de « https://berlin.guixsd.org/nar/gzip/wq4x3c43j8y96vn6k8h5jnd4jz6f2zvc-guix-daemon-0.14.0-12.77a1aac »...
guix-daemon-0.14.0-12.77a1aac 334KiB 2.7MiB/s 00:00 [##################] 100.0%
Téléchargement de « https://berlin.guixsd.org/nar/gzip/zbbkwn1ilis6fkavs3lnpklys72khdlx-libssh-0.7.5-0.239d0f7 »...
libssh-0.7.5-0.239d0f7 223KiB 1.9MiB/s 00:00 [##################] 100.0%
Téléchargement de « https://berlin.guixsd.org/nar/gzip/r4q5x1dc8q3g885d67m18il2d6hpbddl-libssh2-1.8.0 »...
libssh2-1.8.0 274KiB 2.3MiB/s 00:00 [##################] 100.0%
Téléchargement de « https://berlin.guixsd.org/nar/gzip/5lmr2x0cl45x0f15hsbaw4y560gnwry3-guile-ssh-0.11.2 »...
guile-ssh-0.11.2 411KiB 2.7MiB/s 00:00 [##################] 100.0%
Téléchargement de « https://berlin.guixsd.org/nar/gzip/gqqy05yadvg7afiaafymw2x4899hgr3c-libgit2-0.26.0 »...
libgit2-0.26.0 606KiB 3.2MiB/s 00:00 [##################] 100.0%
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compiling... 100.0% of 1 files
compiling... 65.0% of 40 filesIn ice-9/boot-9.scm:
829:9 19 guile: symbol lookup error: /gnu/store/6mfd4f8gy11rgn2xk00cnslmrslg9w7h-guile-2.2.3/lib/libguile-2.2.so.1: undefined symbol: u8_mbtoucr
guix pull: error: corrupt input while restoring archive from #<closed: file 31742a0>
^ permalink raw reply [flat|nested] 3+ messages in thread
* bug#31843: guix pull corrupted current guix
2018-06-15 11:25 bug#31843: guix pull corrupted current guix Julien Lepiller
@ 2018-06-15 15:27 ` Ludovic Courtès
2018-06-15 15:39 ` Julien Lepiller
0 siblings, 1 reply; 3+ messages in thread
From: Ludovic Courtès @ 2018-06-15 15:27 UTC (permalink / raw)
To: Julien Lepiller; +Cc: 31843
Hello,
Julien Lepiller <julien@lepiller.eu> skribis:
> Hi, running guix pull this morning corrupted my current guix command.
Let’s not jump to the conclusion. :-)
> I am running on guixsd. Because I don't have a lot of memory, I sent a
> generation of .config/guix/current to the server with:
>
> guix archive --export -r `readlink -f .config/guix/current` | ssh
> machine guix archive --import
Note that you can use ‘guix copy’ instead, which avoids sending store
items already present on the target.
> This morning, I tried to run guix pull to see how far it would go (and
> if I could download some parts from hydra or berlin). As expected, it
> ran out of memory, but left my store in a state where the guix command
> linked to from .config/guix/current only contains garbage. Attached is
> the output of "guix pull --cores=1" on that machine that lead to the
> bug, and the new content of the guix command.
>
> The corrupted file is from a store item that was present (and valid)
> before I ran guix pull, so I thought it was impossible for guix to
> modify it.
[...]
> compiling... 100.0% of 1 files
> compiling... 65.0% of 40 filesIn ice-9/boot-9.scm:
> 829:9 19 guile: symbol lookup error: /gnu/store/6mfd4f8gy11rgn2xk00cnslmrslg9w7h-guile-2.2.3/lib/libguile-2.2.so.1: undefined symbol: u8_mbtoucr
> guix pull: error: corrupt input while restoring archive from #<closed: file 31742a0>
To me, this error suggests that
/gnu/store/6mfd4f8gy11rgn2xk00cnslmrslg9w7h-guile-2.2.3 was already
corrupt at the time you run ‘guix pull’.
Did you try running ‘guix gc --verify’ on that machine (using an older
Guix)?
Are there signs in the kernel log of a file system corruption?
Thanks,
Ludo’.
^ permalink raw reply [flat|nested] 3+ messages in thread
* bug#31843: guix pull corrupted current guix
2018-06-15 15:27 ` Ludovic Courtès
@ 2018-06-15 15:39 ` Julien Lepiller
0 siblings, 0 replies; 3+ messages in thread
From: Julien Lepiller @ 2018-06-15 15:39 UTC (permalink / raw)
To: 31843-done
Le 2018-06-15 17:27, ludo@gnu.org a écrit :
> Hello,
>
> Julien Lepiller <julien@lepiller.eu> skribis:
>
>> Hi, running guix pull this morning corrupted my current guix command.
>
> Let’s not jump to the conclusion. :-)
>
>> I am running on guixsd. Because I don't have a lot of memory, I sent a
>> generation of .config/guix/current to the server with:
>>
>> guix archive --export -r `readlink -f .config/guix/current` | ssh
>> machine guix archive --import
>
> Note that you can use ‘guix copy’ instead, which avoids sending store
> items already present on the target.
>
>> This morning, I tried to run guix pull to see how far it would go (and
>> if I could download some parts from hydra or berlin). As expected, it
>> ran out of memory, but left my store in a state where the guix command
>> linked to from .config/guix/current only contains garbage. Attached is
>> the output of "guix pull --cores=1" on that machine that lead to the
>> bug, and the new content of the guix command.
>>
>> The corrupted file is from a store item that was present (and valid)
>> before I ran guix pull, so I thought it was impossible for guix to
>> modify it.
>
> [...]
>
>> compiling... 100.0% of 1 files
>> compiling... 65.0% of 40 filesIn ice-9/boot-9.scm:
>> 829:9 19 guile: symbol lookup error:
>> /gnu/store/6mfd4f8gy11rgn2xk00cnslmrslg9w7h-guile-2.2.3/lib/libguile-2.2.so.1:
>> undefined symbol: u8_mbtoucr
>> guix pull: error: corrupt input while restoring archive from #<closed:
>> file 31742a0>
>
> To me, this error suggests that
> /gnu/store/6mfd4f8gy11rgn2xk00cnslmrslg9w7h-guile-2.2.3 was already
> corrupt at the time you run ‘guix pull’.
>
> Did you try running ‘guix gc --verify’ on that machine (using an older
> Guix)?
>
> Are there signs in the kernel log of a file system corruption?
>
> Thanks,
> Ludo’.
Ok, that was it. Not guix' fault so closing this ticket :)
Thank you!
^ permalink raw reply [flat|nested] 3+ messages in thread
end of thread, other threads:[~2018-06-15 15:40 UTC | newest]
Thread overview: 3+ messages (download: mbox.gz / follow: Atom feed)
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2018-06-15 11:25 bug#31843: guix pull corrupted current guix Julien Lepiller
2018-06-15 15:27 ` Ludovic Courtès
2018-06-15 15:39 ` Julien Lepiller
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