From: Simon Tournier <zimon.toutoune@gmail.com>
To: Timothy Sample <samplet@ngyro.com>
Cc: rekado@elephly.net, "Ludovic Courtès" <ludovic.courtes@inria.fr>,
me@tobias.gr, 39885@debbugs.gnu.org
Subject: bug#39885: Bioconductor tarballs are not archived
Date: Mon, 19 Feb 2024 17:50:59 +0100 [thread overview]
Message-ID: <87v86k4cuk.fsf@gmail.com> (raw)
In-Reply-To: <87y1bkwfly.fsf@ngyro.com>
Hi,
On ven., 16 févr. 2024 at 10:14, Timothy Sample <samplet@ngyro.com> wrote:
>> Can we consider that this report is now done? Because:
>>
>> 1. SWH supports ExtID and nar hash lookup.
>>
>> 2. Missing origins are currently ingested by SWH.
>> (via specific sources.json)
>
> I think that would be jumping the gun a little bit.
>
> In some sense, the report is only *done* when “stored” hits 100% (or
> close to it, with the remainder being stuff we are pretty sure no longer
> exists). This won’t happen just because of your second point there.
Just to be sure: we are speaking about Bioconductor only, right?
> When the historical “sources.json” is loaded, things will be much, much,
> better, sure. Sources will still be missing, though.
Yeah, sources will still be missing but I expect that Bioconductor will
be not. The only issue is about “annotation” and maybe “experiment”.
However, here we are hitting the boundary between code and data:
annotation and experiment might be very large and potentially skipped by
SWH and they contain few if no code but plain data.
We can still discuss what to do here; in this already long thread. :-)
Or we can open another thread for this specific case about Bioconductor
annotation and experiment.
> To me, this is an
> invitation to more subtle analysis, like weighing sources by their
> “importance” in the package graph. Then there’s still shortcomings with
> Disarchive that have to be resolved (which is work best guided by
> numbers in the report).
Yeah. But that seems a large scope than Bioconductor case, no?
> Also, it will always be a good idea to verify that things are working.
> Ideally this could be simpler (leveraging ExtID lookup) and continuous.
Indeed, checking that all Bioconductor sources can be extracted from
SWH+Disarchive seems the path forward closing this report. :-)
Cheers,
simon
next prev parent reply other threads:[~2024-02-19 21:06 UTC|newest]
Thread overview: 31+ messages / expand[flat|nested] mbox.gz Atom feed top
2020-03-03 15:59 bug#39885: Bioconductor URI, fallback and time-machine zimoun
2020-03-23 21:20 ` Ricardo Wurmus
2020-05-21 23:29 ` zimoun
2020-06-24 11:07 ` zimoun
2020-06-28 20:14 ` Ludovic Courtès
2020-06-29 17:36 ` zimoun
2020-06-29 20:42 ` Ludovic Courtès
2020-11-19 14:22 ` zimoun
2021-11-22 19:48 ` zimoun
2022-07-18 16:03 ` zimoun
2022-07-18 16:21 ` Ricardo Wurmus
2022-08-10 18:25 ` Ricardo Wurmus
2022-08-10 19:44 ` Maxime Devos
2022-08-10 19:48 ` Maxime Devos
2022-09-09 17:23 ` zimoun
2024-01-08 15:07 ` Ludovic Courtès
2024-01-08 15:34 ` Ricardo Wurmus
2024-01-11 16:11 ` Simon Tournier
2023-12-22 13:40 ` bug#39885: Bioconductor tarballs are not archived Ludovic Courtès
2024-01-08 9:09 ` Simon Tournier
2024-01-08 15:02 ` Ludovic Courtès
2024-01-10 12:41 ` Ricardo Wurmus
2024-01-10 15:23 ` Simon Tournier
2024-01-19 15:46 ` Timothy Sample
2024-01-23 9:10 ` Ludovic Courtès
2024-02-14 15:23 ` Simon Tournier
2024-02-16 16:14 ` Timothy Sample
2024-02-19 16:50 ` Simon Tournier [this message]
2024-02-21 18:16 ` Timothy Sample
2023-12-22 20:57 ` bug#39885: Bioconductor URI, fallback and time-machine Ludovic Courtès
2024-01-02 9:20 ` Simon Tournier
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