* bug#55709: R texinfo documents are not showing up for me
@ 2022-05-29 15:48 Kyle Andrews
2022-05-29 22:37 ` Ludovic Courtès
0 siblings, 1 reply; 9+ messages in thread
From: Kyle Andrews @ 2022-05-29 15:48 UTC (permalink / raw)
To: 55709
Dear Guix,
I see that R provides a lot of texinfo documentation, but none of it is
showing up for me in 'Emacs M-x info' or by typing 'info R'. Is this
just my setup problem or is it a wider phenomenon?
Thanks,
Kyle
^ permalink raw reply [flat|nested] 9+ messages in thread
* bug#55709: R texinfo documents are not showing up for me
2022-05-29 15:48 bug#55709: R texinfo documents are not showing up for me Kyle Andrews
@ 2022-05-29 22:37 ` Ludovic Courtès
2022-05-31 0:35 ` Kyle Andrews
0 siblings, 1 reply; 9+ messages in thread
From: Ludovic Courtès @ 2022-05-29 22:37 UTC (permalink / raw)
To: Kyle Andrews; +Cc: 55709
Hi,
Kyle Andrews <kyle@posteo.net> skribis:
> I see that R provides a lot of texinfo documentation, but none of it is
> showing up for me in 'Emacs M-x info' or by typing 'info R'. Is this
> just my setup problem or is it a wider phenomenon?
The following Info files are provided by ‘r-minimal’:
--8<---------------cut here---------------start------------->8---
$ find -L $(guix build r-minimal) -name \*.info\*
/gnu/store/jwr3aajwjxwv3swdwbdxzh8ccn3mdlvz-r-minimal-4.2.0/share/info/R-exts.info-1.gz
/gnu/store/jwr3aajwjxwv3swdwbdxzh8ccn3mdlvz-r-minimal-4.2.0/share/info/R-admin.info.gz
/gnu/store/jwr3aajwjxwv3swdwbdxzh8ccn3mdlvz-r-minimal-4.2.0/share/info/R-data.info.gz
/gnu/store/jwr3aajwjxwv3swdwbdxzh8ccn3mdlvz-r-minimal-4.2.0/share/info/R-lang.info.gz
/gnu/store/jwr3aajwjxwv3swdwbdxzh8ccn3mdlvz-r-minimal-4.2.0/share/info/R-intro.info.gz
/gnu/store/jwr3aajwjxwv3swdwbdxzh8ccn3mdlvz-r-minimal-4.2.0/share/info/R-exts.info-3.gz
/gnu/store/jwr3aajwjxwv3swdwbdxzh8ccn3mdlvz-r-minimal-4.2.0/share/info/R-exts.info.gz
/gnu/store/jwr3aajwjxwv3swdwbdxzh8ccn3mdlvz-r-minimal-4.2.0/share/info/R-exts.info-2.gz
/gnu/store/jwr3aajwjxwv3swdwbdxzh8ccn3mdlvz-r-minimal-4.2.0/share/info/R-ints.info.gz
/gnu/store/jwr3aajwjxwv3swdwbdxzh8ccn3mdlvz-r-minimal-4.2.0/share/info/R-FAQ.info.gz
--8<---------------cut here---------------end--------------->8---
This package is propagated by ‘r’. Thus, you can access these manuals
for instance with:
guix shell r info-reader -- info R-intro
You can replace ‘info-reader’ by ‘emacs’; the key here is that this sets
the ‘INFOPATH’ environment variable.
Does it work for you?
HTH,
Ludo’.
^ permalink raw reply [flat|nested] 9+ messages in thread
* bug#55709: R texinfo documents are not showing up for me
2022-05-29 22:37 ` Ludovic Courtès
@ 2022-05-31 0:35 ` Kyle Andrews
2022-05-31 8:37 ` Maxime Devos
2022-05-31 9:37 ` Ludovic Courtès
0 siblings, 2 replies; 9+ messages in thread
From: Kyle Andrews @ 2022-05-31 0:35 UTC (permalink / raw)
To: Ludovic Courtès; +Cc: 55709
Hi Ludo,
I tried with both info-reader and emacs. The former (your command)
worked (yay!), while the latter (see below) errored out: saying emacs
could not be found.
guix shell r emacs -- emacs
# /gnu/store/rg8f1jd773n2l78p24m1gds3dmvcgkjq-profile/bin/emacs: error while loading shared libraries: /gnu/store/vncwfb53kbnyflyc1jyd2xv9sifpw202-gtk+-3.24.30/lib/libgdk-3.so.0: file too short
However, I tried also with emacs-no-x and it picked up the R texinfo
manuals with no problems. I also checked the INFOPATH and saw those
files directly in there. That's certainly better than on my system where
they are not.
The first item in $(guix describe) is:
guix acb0830
repository URL: https://git.savannah.gnu.org/git/guix.git
branch: master
commit: acb08304c862d65679086a9f160240bfd598289d
Cheers,
Kyle
Ludovic Courtès <ludo@gnu.org> writes:
> Hi,
>
> Kyle Andrews <kyle@posteo.net> skribis:
>
>> I see that R provides a lot of texinfo documentation, but none of it is
>> showing up for me in 'Emacs M-x info' or by typing 'info R'. Is this
>> just my setup problem or is it a wider phenomenon?
>
> The following Info files are provided by ‘r-minimal’:
>
> $ find -L $(guix build r-minimal) -name \*.info\*
> /gnu/store/jwr3aajwjxwv3swdwbdxzh8ccn3mdlvz-r-minimal-4.2.0/share/info/R-exts.info-1.gz
> /gnu/store/jwr3aajwjxwv3swdwbdxzh8ccn3mdlvz-r-minimal-4.2.0/share/info/R-admin.info.gz
> /gnu/store/jwr3aajwjxwv3swdwbdxzh8ccn3mdlvz-r-minimal-4.2.0/share/info/R-data.info.gz
> /gnu/store/jwr3aajwjxwv3swdwbdxzh8ccn3mdlvz-r-minimal-4.2.0/share/info/R-lang.info.gz
> /gnu/store/jwr3aajwjxwv3swdwbdxzh8ccn3mdlvz-r-minimal-4.2.0/share/info/R-intro.info.gz
> /gnu/store/jwr3aajwjxwv3swdwbdxzh8ccn3mdlvz-r-minimal-4.2.0/share/info/R-exts.info-3.gz
> /gnu/store/jwr3aajwjxwv3swdwbdxzh8ccn3mdlvz-r-minimal-4.2.0/share/info/R-exts.info.gz
> /gnu/store/jwr3aajwjxwv3swdwbdxzh8ccn3mdlvz-r-minimal-4.2.0/share/info/R-exts.info-2.gz
> /gnu/store/jwr3aajwjxwv3swdwbdxzh8ccn3mdlvz-r-minimal-4.2.0/share/info/R-ints.info.gz
> /gnu/store/jwr3aajwjxwv3swdwbdxzh8ccn3mdlvz-r-minimal-4.2.0/share/info/R-FAQ.info.gz
>
> This package is propagated by ‘r’. Thus, you can access these manuals
> for instance with:
>
> guix shell r info-reader -- info R-intro
>
> You can replace ‘info-reader’ by ‘emacs’; the key here is that this sets
> the ‘INFOPATH’ environment variable.
>
> Does it work for you?
>
> HTH,
> Ludo’.
^ permalink raw reply [flat|nested] 9+ messages in thread* bug#55709: R texinfo documents are not showing up for me
2022-05-31 0:35 ` Kyle Andrews
@ 2022-05-31 8:37 ` Maxime Devos
2022-06-02 6:12 ` Liliana Marie Prikler
2022-05-31 9:37 ` Ludovic Courtès
1 sibling, 1 reply; 9+ messages in thread
From: Maxime Devos @ 2022-05-31 8:37 UTC (permalink / raw)
To: Kyle Andrews, Ludovic Courtès; +Cc: 55709
[-- Attachment #1: Type: text/plain, Size: 606 bytes --]
Kyle Andrews schreef op di 31-05-2022 om 00:35 [+0000]:
> # /gnu/store/rg8f1jd773n2l78p24m1gds3dmvcgkjq-profile/bin/emacs: error while loading shared libraries: /gnu/store/vncwfb53kbnyflyc1jyd2xv9sifpw202-gtk+-3.24.30/lib/libgdk-3.so.0: file too short
Seems suspect. I'd suggest trying
guix gc --verify=contents /gnu/store/vncwfb53kbnyflyc1jyd2xv9sifpw202-gtk+-3.24.30
but that fails locally, apparently no arguments are accepted,
so maybe try
guix gc --verify=contents
(Is there a method to verify and repair a _single_ store item instead of the whole store?).
Greetings,
Maxime
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^ permalink raw reply [flat|nested] 9+ messages in thread
* bug#55709: R texinfo documents are not showing up for me
2022-05-31 8:37 ` Maxime Devos
@ 2022-06-02 6:12 ` Liliana Marie Prikler
2022-06-04 23:29 ` Kyle Andrews
0 siblings, 1 reply; 9+ messages in thread
From: Liliana Marie Prikler @ 2022-06-02 6:12 UTC (permalink / raw)
To: Maxime Devos, Kyle Andrews, Ludovic Courtès; +Cc: 55709
Am Dienstag, dem 31.05.2022 um 10:37 +0200 schrieb Maxime Devos:
> (Is there a method to verify and repair a _single_ store item instead
> of the whole store?).
I think the syntax for that'd be ‘[sudo] guix build --repair
STORE_ITEM’.
Cheers
^ permalink raw reply [flat|nested] 9+ messages in thread
* bug#55709: R texinfo documents are not showing up for me
2022-06-02 6:12 ` Liliana Marie Prikler
@ 2022-06-04 23:29 ` Kyle Andrews
0 siblings, 0 replies; 9+ messages in thread
From: Kyle Andrews @ 2022-06-04 23:29 UTC (permalink / raw)
To: Liliana Marie Prikler; +Cc: Ludovic Courtès, Maxime Devos, 55709
I had a really hard time getting ~guix gc --verify=contents,repair~ to
actually fix the problem and get commands like emacs to run.
Nothing worked until I mounted /gnu/store as read write and removed the
zeroed file completely for that particular gtk+3.24.30 folder, removed
the ~guix/store/.links~ folder, and then finally reran the ~guix gc ...~
command. That was after doing a fsck as well.
Hat tip to Tobias for spending a good chunk of saturday helping me
through this. He though this might be related to issue 50121 after I
referred him to it.
Cheers,
Kyle
Liliana Marie Prikler <liliana.prikler@ist.tugraz.at> writes:
> Am Dienstag, dem 31.05.2022 um 10:37 +0200 schrieb Maxime Devos:
>> (Is there a method to verify and repair a _single_ store item instead
>> of the whole store?).
> I think the syntax for that'd be ‘[sudo] guix build --repair
> STORE_ITEM’.
>
> Cheers
^ permalink raw reply [flat|nested] 9+ messages in thread
* bug#55709: R texinfo documents are not showing up for me
2022-05-31 0:35 ` Kyle Andrews
2022-05-31 8:37 ` Maxime Devos
@ 2022-05-31 9:37 ` Ludovic Courtès
2022-06-02 0:42 ` Kyle Andrews
1 sibling, 1 reply; 9+ messages in thread
From: Ludovic Courtès @ 2022-05-31 9:37 UTC (permalink / raw)
To: Kyle Andrews; +Cc: 55709
Hi Kyle,
Kyle Andrews <kyle@posteo.net> skribis:
> I tried with both info-reader and emacs. The former (your command)
> worked (yay!), while the latter (see below) errored out: saying emacs
> could not be found.
>
> guix shell r emacs -- emacs
> # /gnu/store/rg8f1jd773n2l78p24m1gds3dmvcgkjq-profile/bin/emacs: error while loading shared libraries: /gnu/store/vncwfb53kbnyflyc1jyd2xv9sifpw202-gtk+-3.24.30/lib/libgdk-3.so.0: file too short
Could you type “unset LD_LIBRARY_PATH” before this command, to be on the
safe side? Does it make a difference?
If not, what does this say:
du -L /gnu/store/vncwfb53kbnyflyc1jyd2xv9sifpw202-gtk+-3.24.30/lib/libgdk-3.so.0
Here I get:
1044 /gnu/store/vncwfb53kbnyflyc1jyd2xv9sifpw202-gtk+-3.24.30/lib/libgdk-3.so.0
Thanks,
Ludo’.
^ permalink raw reply [flat|nested] 9+ messages in thread
* bug#55709: R texinfo documents are not showing up for me
2022-05-31 9:37 ` Ludovic Courtès
@ 2022-06-02 0:42 ` Kyle Andrews
2022-06-02 13:39 ` Ludovic Courtès
0 siblings, 1 reply; 9+ messages in thread
From: Kyle Andrews @ 2022-06-02 0:42 UTC (permalink / raw)
To: Ludovic Courtès; +Cc: 55709
Thanks for looking into this!
Ludovic Courtès <ludo@gnu.org> writes:
> Hi Kyle,
>
> Kyle Andrews <kyle@posteo.net> skribis:
>
>> I tried with both info-reader and emacs. The former (your command)
>> worked (yay!), while the latter (see below) errored out: saying emacs
>> could not be found.
>>
>> guix shell r emacs -- emacs
>> # /gnu/store/rg8f1jd773n2l78p24m1gds3dmvcgkjq-profile/bin/emacs: error while loading shared libraries: /gnu/store/vncwfb53kbnyflyc1jyd2xv9sifpw202-gtk+-3.24.30/lib/libgdk-3.so.0: file too short
>
> Could you type “unset LD_LIBRARY_PATH” before this command, to be on the
> safe side? Does it make a difference?
I tried unsetting LD_LIBRARY_PATH and it made no difference.
> If not, what does this say:
>
> du -L /gnu/store/vncwfb53kbnyflyc1jyd2xv9sifpw202-gtk+-3.24.30/lib/libgdk-3.so.0
>
> Here I get:
>
> 1044 /gnu/store/vncwfb53kbnyflyc1jyd2xv9sifpw202-gtk+-3.24.30/lib/libgdk-3.so.0
>
> Thanks,
> Ludo’.
For me it gave:
0 /gnu/store/vncwfb53kbnyflyc1jyd2xv9sifpw202-gtk+-3.24.30/lib/libgdk-3.so.0
Does this mean I have some store corruption as Maxime suggested?
Thanks,
Kyle
^ permalink raw reply [flat|nested] 9+ messages in thread
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2022-05-29 15:48 bug#55709: R texinfo documents are not showing up for me Kyle Andrews
2022-05-29 22:37 ` Ludovic Courtès
2022-05-31 0:35 ` Kyle Andrews
2022-05-31 8:37 ` Maxime Devos
2022-06-02 6:12 ` Liliana Marie Prikler
2022-06-04 23:29 ` Kyle Andrews
2022-05-31 9:37 ` Ludovic Courtès
2022-06-02 0:42 ` Kyle Andrews
2022-06-02 13:39 ` Ludovic Courtès
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