bug#21267: 25.0.50; error when installing org from dirty Emacs

bug#21267: 25.0.50; error when installing org from dirty Emacs

[Rasmus]

Hi,

1. Start emacs -Q to use build in version of org 
2. Load org: (mapc 'require '(org ob ox-latex))
3. Install org 8.3 via gelpa
4. Start with my "normal" emacs instance and M-x orgstruct.
   I have not found a way to trigger this from a clean emacs...

my version of emacs is GNU Emacs 25.0.50.1 (x86_64-unknown-linux-gnu,
GTK+ Version 3.16.6) of 2015-08-11 on W530.

I hope this is enough info.

Thanks,
Rasmus

Backtrace: 

Debugger entered--Lisp error: (invalid-function org-babel-header-args-safe-fn)
  org-babel-header-args-safe-fn((:cache :colnames :comments :exports :epilogue :hlines :noeval :noweb :noweb-ref :noweb-sep :padline :prologue :rownames :sep :session :tangle :wrap (:eval "never" "query") (:results lambda (str) (not (string-match "file" str))) :width :height :bg :units :pointsize :antialias :quality :compression :res :type :family :title :fonts :version :paper :encoding :pagecentre :colormodel :useDingbats :horizontal))
  byte-code("\301\302\303\304\b!#\210\305\306\307\310\311\312\313\314\315\316&	\207" [ob-R-safe-header-args put org-babel-default-header-args:R safe-local-variable org-babel-header-args-safe-fn custom-declare-variable org-babel-R-command "R --slave --no-save" "Name of command to use for executing R code." :group org-babel :version "24.1" :type string] 10)
  require(ob-R)
  #[(pair) "\bA\303\b@!\211\203\304\305\306	P!!\202%\307\305\310	P!!\210\307\305\311	P!!*\207" [pair lang active symbol-name require intern "ob-" fmakunbound "org-babel-execute:" "org-babel-expand-body:"] 5]((R . t))
  mapc(#[(pair) "\bA\303\b@!\211\203\304\305\306	P!!\202%\307\305\310	P!!\210\307\305\311	P!!*\207" [pair lang active symbol-name require intern "ob-" fmakunbound "org-babel-execute:" "org-babel-expand-body:"] 5] ((R . t) (latex . t) (fortran . t) (emacs-lisp . t) (C . t) (latex . t) (python . t) (octave . t) (org . t) (awk . t) (shell . t) (calc . t)))
  org-babel-do-load-languages(org-babel-load-languages ((R . t) (latex . t) (fortran . t) (emacs-lisp . t) (C . t) (latex . t) (python . t) (octave . t) (org . t) (awk . t) (shell . t) (calc . t)))
  (lambda nil (setq org-confirm-babel-evaluate nil) (org-babel-do-load-languages (quote org-babel-load-languages) (mapcar (function (lambda (lang) (cons lang t))) (quote (R latex fortran emacs-lisp C latex python octave org awk shell calc)))))()
  eval-after-load-helper("/home/rasmus/.emacs.d/elpa/org-20150810/ob.elc")
  run-hook-with-args(eval-after-load-helper "/home/rasmus/.emacs.d/elpa/org-20150810/ob.elc")
  do-after-load-evaluation("/home/rasmus/.emacs.d/elpa/org-20150810/ob.elc")
  require(ob)
  require(ob-R)
  #[(pair) "\bA\303\b@!\211\203\304\305\306	P!!\202%\307\305\310	P!!\210\307\305\311	P!!*\207" [pair lang active symbol-name require intern "ob-" fmakunbound "org-babel-execute:" "org-babel-expand-body:"] 5]((R . t))
  mapc(#[(pair) "\bA\303\b@!\211\203\304\305\306	P!!\202%\307\305\310	P!!\210\307\305\311	P!!*\207" [pair lang active symbol-name require intern "ob-" fmakunbound "org-babel-execute:" "org-babel-expand-body:"] 5] ((R . t) (latex . t) (fortran . t) (emacs-lisp . t) (C . t) (latex . t) (python . t) (octave . t) (org . t) (awk . t) (shell . t) (calc . t)))
  org-babel-do-load-languages(org-babel-load-languages ((R . t) (latex . t) (fortran . t) (emacs-lisp . t) (C . t) (latex . t) (python . t) (octave . t) (org . t) (awk . t) (shell . t) (calc . t)))
  custom-initialize-reset(org-babel-load-languages (quote ((emacs-lisp . t))))
  custom-declare-variable(org-babel-load-languages (quote ((emacs-lisp . t))) "Languages which can be evaluated in Org-mode buffers.\nThis list can be used to load support for any of the languages\nbelow, note that each language will depend on a different set of\nsystem executables and/or Emacs modes.  When a language is\n\"loaded\", then code blocks in that language can be evaluated\nwith `org-babel-execute-src-block' bound by default to C-c\nC-c (note the `org-babel-no-eval-on-ctrl-c-ctrl-c' variable can\nbe set to remove code block evaluation from the C-c C-c\nkeybinding.  By default only Emacs Lisp (which has no\nrequirements) is loaded." :group org-babel :set org-babel-do-load-languages :version "24.1" :type (alist :tag "Babel Languages" :key-type (choice (const :tag "Awk" awk) (const :tag "C" C) (const :tag "R" R) (const :tag "Asymptote" asymptote) (const :tag "Calc" calc) (const :tag "Clojure" clojure) (const :tag "CSS" css) (const :tag "Ditaa" ditaa) (const :tag "Dot" dot) (const :tag "Emacs Lisp" emacs-lisp) (const :tag "Forth" forth) (const :tag "Fortran" fortran) (const :tag "Gnuplot" gnuplot) (const :tag "Haskell" haskell) (const :tag "IO" io) (const :tag "J" J) (const :tag "Java" java) (const :tag "Javascript" js) (const :tag "LaTeX" latex) (const :tag "Ledger" ledger) (const :tag "Lilypond" lilypond) (const :tag "Lisp" lisp) (const :tag "Makefile" makefile) (const :tag "Maxima" maxima) (const :tag "Matlab" matlab) (const :tag "Mscgen" mscgen) (const :tag "Ocaml" ocaml) (const :tag "Octave" octave) (const :tag "Org" org) (const :tag "Perl" perl) (const :tag "Pico Lisp" picolisp) (const :tag "PlantUML" plantuml) (const :tag "Python" python) (const :tag "Ruby" ruby) (const :tag "Sass" sass) (const :tag "Scala" scala) (const :tag "Scheme" scheme) (const :tag "Screen" screen) (const :tag "Shell Script" shell) (const :tag "Shen" shen) (const :tag "Sql" sql) (const :tag "Sqlite" sqlite) (const :tag "ebnf2ps" ebnf2ps)) :value-type (boolean :tag "Activate" :value t)))
  byte-code("\300\301\302\303\304\305\306\307\310\311\312\313&\v\210\300\314\315\316\312\317\310\311\304\320&	\210\321\322\323\"\210\321\324\323\"\207" [custom-declare-variable org-babel-load-languages (quote ((emacs-lisp . t))) "Languages which can be evaluated in Org-mode buffers.\nThis list can be used to load support for any of the languages\nbelow, note that each language will depend on a different set of\nsystem executables and/or Emacs modes.  When a language is\n\"loaded\", then code blocks in that language can be evaluated\nwith `org-babel-execute-src-block' bound by default to C-c\nC-c (note the `org-babel-no-eval-on-ctrl-c-ctrl-c' variable can\nbe set to remove code block evaluation from the C-c C-c\nkeybinding.  By default only Emacs Lisp (which has no\nrequirements) is loaded." :group org-babel :set org-babel-do-load-languages :version "24.1" :type (alist :tag "Babel Languages" :key-type (choice (const :tag "Awk" awk) (const :tag "C" C) (const :tag "R" R) (const :tag "Asymptote" asymptote) (const :tag "Calc" calc) (const :tag "Clojure" clojure) (const :tag "CSS" css) (const :tag "Ditaa" ditaa) (const :tag "Dot" dot) (const :tag "Emacs Lisp" emacs-lisp) (const :tag "Forth" forth) (const :tag "Fortran" fortran) (const :tag "Gnuplot" gnuplot) (const :tag "Haskell" haskell) (const :tag "IO" io) (const :tag "J" J) (const :tag "Java" java) (const :tag "Javascript" js) (const :tag "LaTeX" latex) (const :tag "Ledger" ledger) (const :tag "Lilypond" lilypond) (const :tag "Lisp" lisp) (const :tag "Makefile" makefile) (const :tag "Maxima" maxima) (const :tag "Matlab" matlab) (const :tag "Mscgen" mscgen) (const :tag "Ocaml" ocaml) (const :tag "Octave" octave) (const :tag "Org" org) (const :tag "Perl" perl) (const :tag "Pico Lisp" picolisp) (const :tag "PlantUML" plantuml) (const :tag "Python" python) (const :tag "Ruby" ruby) (const :tag "Sass" sass) (const :tag "Scala" scala) (const :tag "Scheme" scheme) (const :tag "Screen" screen) (const :tag "Shell Script" shell) (const :tag "Shen" shen) (const :tag "Sql" sql) (const :tag "Sqlite" sqlite) (const :tag "ebnf2ps" ebnf2ps)) :value-type (boolean :tag "Activate" :value t)) org-clone-delete-id nil "Remove ID property of clones of a subtree.\nWhen non-nil, clones of a subtree don't inherit the ID property.\nOtherwise they inherit the ID property with a new unique\nidentifier." boolean org-id autoload org-release "org-version.el" org-git-version] 12)
  autoload-do-load((autoload "org" "Toggle the minor mode `orgstruct-mode'.\nThis mode is for using Org-mode structure commands in other\nmodes.  The following keys behave as if Org-mode were active, if\nthe cursor is on a headline, or on a plain list item (both as\ndefined by Org-mode).\n\n(fn &optional ARG)" t nil) orgstruct-mode)
  command-execute(orgstruct-mode record)
  execute-extended-command(nil "orgstruct-mode")
  smex-read-and-run(("toggle-debug-on-error" "edebug-defun" "emacs-version" "org-reload" "zrgrep" "find-library" "paredit-mode" "eval-buffer" "magit-status" "rgrep" "menu-bar-mode" "revert-buffer" "imenu" "compile" "ffap" "shell" "list-packages" "man" "org-publish" "eww" "align-regexp" "org-mode" "R" "erc" "widen" "run-python" "describe-char" "text-mode" "upcase-region" "eval-region" "narrow-to-defun" "ediff-merge" "insert-char" "copyright-update" "customize-variable" "gnus-summary-save-article-file" "rzgrep" "tetris" "apropos" "magit-stash" "smerge-mode" "emacs-lisp-mode" "update-packages" "package-autoremove" "unhighlight-regexp" "company-mode" "apropos-command" "package-install" "message-attach-dir" "gnus-mime-save-part" ...))
  smex()
  funcall-interactively(smex)
  call-interactively(smex nil nil)
  command-execute(smex)


In GNU Emacs 25.0.50.1 (x86_64-unknown-linux-gnu, GTK+ Version 3.16.6)
 of 2015-08-11 on W530
Repository revision: acde89a2088180831e506d0c4255b306a339e291
Windowing system distributor `The X.Org Foundation', version 11.0.11702000
Configured using:
 `configure --prefix=/usr --sysconfdir=/etc --localstatedir=/var
 --libexecdir=/usr/lib --mandir=/usr/share/man --without-sound --with-xft
 --with-xwidgets --with-x-toolkit=gtk3 'CFLAGS=-march=x86-64
 -mtune=generic -O2 -pipe -fstack-protector-strong
 --param=ssp-buffer-size=4' 'LDFLAGS=-lMagickWand-6.Q16HDRI
 -lMagickCore-6.Q16HDRI ' CPPFLAGS=-D_FORTIFY_SOURCE=2'

Configured features:
XPM JPEG TIFF GIF PNG RSVG IMAGEMAGICK GPM DBUS GCONF GSETTINGS NOTIFY ACL
GNUTLS LIBXML2 FREETYPE M17N_FLT LIBOTF XFT ZLIB TOOLKIT_SCROLL_BARS GTK3
X11

Important settings:
  value of $LANG: es_ES.utf8
  locale-coding-system: utf-8-unix

Major mode: Group

Minor modes in effect:
  shell-dirtrack-mode: t
  gnus-topic-mode: t
  hl-line-mode: t
  cursor-sensor-mode: t
  gnus-undo-mode: t
  nyan-mode: t
  global-company-mode: t
  company-mode: t
  diff-auto-refine-mode: t
  ido-everywhere: t
  global-auto-revert-mode: t
  which-function-mode: t
  winner-mode: t
  delete-selection-mode: t
  show-paren-mode: t
  electric-pair-mode: t
  savehist-mode: t
  save-place-mode: t
  tooltip-mode: t
  global-eldoc-mode: t
  electric-indent-mode: t
  mouse-wheel-mode: t
  tool-bar-mode: t
  menu-bar-mode: t
  file-name-shadow-mode: t
  global-font-lock-mode: t
  font-lock-mode: t
  auto-composition-mode: t
  auto-encryption-mode: t
  auto-compression-mode: t
  buffer-read-only: t
  column-number-mode: t
  line-number-mode: t
  global-visual-line-mode: t
  visual-line-mode: t
  transient-mark-mode: t

Recent messages:
No new newsgroups
Checking new news...
Reading active file via nnnil...done
Reading active file via nndraft...done
Checking new news...done
previous-line: Beginning of buffer
Checking new news...
Reading active file via nnnil...done
Reading active file via nndraft...done
Checking new news...done
 [2 times]

Load-path shadows:
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/usr/share/emacs/site-lisp/gnus/md4 hides /usr/share/emacs/25.0.50/lisp/md4
/usr/share/emacs/site-lisp/gnus/hex-util hides /usr/share/emacs/25.0.50/lisp/hex-util
/usr/share/emacs/site-lisp/gnus/format-spec hides /usr/share/emacs/25.0.50/lisp/format-spec
/usr/share/emacs/site-lisp/gnus/color hides /usr/share/emacs/25.0.50/lisp/color
/home/rasmus/.emacs.d/lisp/abbrev hides /usr/share/emacs/25.0.50/lisp/abbrev
/usr/share/emacs/site-lisp/gnus/dns-mode hides /usr/share/emacs/25.0.50/lisp/textmodes/dns-mode
/usr/share/emacs/site-lisp/org/ox-texinfo hides /usr/share/emacs/25.0.50/lisp/org/ox-texinfo
/usr/share/emacs/site-lisp/org/ox-odt hides /usr/share/emacs/25.0.50/lisp/org/ox-odt
/usr/share/emacs/site-lisp/org/ox-publish hides /usr/share/emacs/25.0.50/lisp/org/ox-publish
/usr/share/emacs/site-lisp/org/ox-org hides /usr/share/emacs/25.0.50/lisp/org/ox-org
/usr/share/emacs/site-lisp/org/ox-md hides /usr/share/emacs/25.0.50/lisp/org/ox-md
/usr/share/emacs/site-lisp/org/ox-latex hides /usr/share/emacs/25.0.50/lisp/org/ox-latex
/usr/share/emacs/site-lisp/org/ox-man hides /usr/share/emacs/25.0.50/lisp/org/ox-man
/usr/share/emacs/site-lisp/org/ox-icalendar hides /usr/share/emacs/25.0.50/lisp/org/ox-icalendar
/usr/share/emacs/site-lisp/org/ox-html hides /usr/share/emacs/25.0.50/lisp/org/ox-html
/usr/share/emacs/site-lisp/org/ox hides /usr/share/emacs/25.0.50/lisp/org/ox
/usr/share/emacs/site-lisp/org/ox-beamer hides /usr/share/emacs/25.0.50/lisp/org/ox-beamer
/usr/share/emacs/site-lisp/org/org-protocol hides /usr/share/emacs/25.0.50/lisp/org/org-protocol
/usr/share/emacs/site-lisp/org/ox-ascii hides /usr/share/emacs/25.0.50/lisp/org/ox-ascii
/usr/share/emacs/site-lisp/org/org-plot hides /usr/share/emacs/25.0.50/lisp/org/org-plot
/usr/share/emacs/site-lisp/org/org-rmail hides /usr/share/emacs/25.0.50/lisp/org/org-rmail
/usr/share/emacs/site-lisp/org/org-table hides /usr/share/emacs/25.0.50/lisp/org/org-table
/usr/share/emacs/site-lisp/org/org-timer hides /usr/share/emacs/25.0.50/lisp/org/org-timer
/usr/share/emacs/site-lisp/org/org-w3m hides /usr/share/emacs/25.0.50/lisp/org/org-w3m
/usr/share/emacs/site-lisp/org/org-mobile hides /usr/share/emacs/25.0.50/lisp/org/org-mobile
/usr/share/emacs/site-lisp/org/org-mouse hides /usr/share/emacs/25.0.50/lisp/org/org-mouse
/usr/share/emacs/site-lisp/org/org-src hides /usr/share/emacs/25.0.50/lisp/org/org-src
/usr/share/emacs/site-lisp/org/org hides /usr/share/emacs/25.0.50/lisp/org/org
/usr/share/emacs/site-lisp/org/org-mhe hides /usr/share/emacs/25.0.50/lisp/org/org-mhe
/usr/share/emacs/site-lisp/org/org-inlinetask hides /usr/share/emacs/25.0.50/lisp/org/org-inlinetask
/usr/share/emacs/site-lisp/org/org-info hides /usr/share/emacs/25.0.50/lisp/org/org-info
/usr/share/emacs/site-lisp/org/org-pcomplete hides /usr/share/emacs/25.0.50/lisp/org/org-pcomplete
/usr/share/emacs/site-lisp/org/org-irc hides /usr/share/emacs/25.0.50/lisp/org/org-irc
/usr/share/emacs/site-lisp/org/org-indent hides /usr/share/emacs/25.0.50/lisp/org/org-indent
/usr/share/emacs/site-lisp/org/org-macs hides /usr/share/emacs/25.0.50/lisp/org/org-macs
/usr/share/emacs/site-lisp/org/org-list hides /usr/share/emacs/25.0.50/lisp/org/org-list
/usr/share/emacs/site-lisp/org/org-macro hides /usr/share/emacs/25.0.50/lisp/org/org-macro
/usr/share/emacs/site-lisp/org/org-id hides /usr/share/emacs/25.0.50/lisp/org/org-id
/usr/share/emacs/site-lisp/org/org-habit hides /usr/share/emacs/25.0.50/lisp/org/org-habit
/usr/share/emacs/site-lisp/org/org-gnus hides /usr/share/emacs/25.0.50/lisp/org/org-gnus
/usr/share/emacs/site-lisp/org/org-feed hides /usr/share/emacs/25.0.50/lisp/org/org-feed
/usr/share/emacs/site-lisp/org/org-element hides /usr/share/emacs/25.0.50/lisp/org/org-element
/usr/share/emacs/site-lisp/org/org-eshell hides /usr/share/emacs/25.0.50/lisp/org/org-eshell
/usr/share/emacs/site-lisp/org/org-docview hides /usr/share/emacs/25.0.50/lisp/org/org-docview
/usr/share/emacs/site-lisp/org/org-footnote hides /usr/share/emacs/25.0.50/lisp/org/org-footnote
/usr/share/emacs/site-lisp/org/org-crypt hides /usr/share/emacs/25.0.50/lisp/org/org-crypt
/usr/share/emacs/site-lisp/org/org-datetree hides /usr/share/emacs/25.0.50/lisp/org/org-datetree
/usr/share/emacs/site-lisp/org/org-ctags hides /usr/share/emacs/25.0.50/lisp/org/org-ctags
/usr/share/emacs/site-lisp/org/org-faces hides /usr/share/emacs/25.0.50/lisp/org/org-faces
/usr/share/emacs/site-lisp/org/org-entities hides /usr/share/emacs/25.0.50/lisp/org/org-entities
/usr/share/emacs/site-lisp/org/ob-C hides /usr/share/emacs/25.0.50/lisp/org/ob-C
/usr/share/emacs/site-lisp/org/org-colview hides /usr/share/emacs/25.0.50/lisp/org/org-colview
/usr/share/emacs/site-lisp/org/ob-fortran hides /usr/share/emacs/25.0.50/lisp/org/ob-fortran
/usr/share/emacs/site-lisp/org/org-clock hides /usr/share/emacs/25.0.50/lisp/org/org-clock
/usr/share/emacs/site-lisp/org/org-agenda hides /usr/share/emacs/25.0.50/lisp/org/org-agenda
/usr/share/emacs/site-lisp/org/org-capture hides /usr/share/emacs/25.0.50/lisp/org/org-capture
/usr/share/emacs/site-lisp/org/org-compat hides /usr/share/emacs/25.0.50/lisp/org/org-compat
/usr/share/emacs/site-lisp/org/org-bbdb hides /usr/share/emacs/25.0.50/lisp/org/org-bbdb
/usr/share/emacs/site-lisp/org/org-attach hides /usr/share/emacs/25.0.50/lisp/org/org-attach
/usr/share/emacs/site-lisp/org/org-bibtex hides /usr/share/emacs/25.0.50/lisp/org/org-bibtex
/usr/share/emacs/site-lisp/org/org-archive hides /usr/share/emacs/25.0.50/lisp/org/org-archive
/usr/share/emacs/site-lisp/org/ob-sql hides /usr/share/emacs/25.0.50/lisp/org/ob-sql
/usr/share/emacs/site-lisp/org/ob-tangle hides /usr/share/emacs/25.0.50/lisp/org/ob-tangle
/usr/share/emacs/site-lisp/org/ob-sqlite hides /usr/share/emacs/25.0.50/lisp/org/ob-sqlite
/usr/share/emacs/site-lisp/org/ob-table hides /usr/share/emacs/25.0.50/lisp/org/ob-table
/usr/share/emacs/site-lisp/org/ob-shen hides /usr/share/emacs/25.0.50/lisp/org/ob-shen
/usr/share/emacs/site-lisp/org/ob-screen hides /usr/share/emacs/25.0.50/lisp/org/ob-screen
/usr/share/emacs/site-lisp/org/ob-ruby hides /usr/share/emacs/25.0.50/lisp/org/ob-ruby
/usr/share/emacs/site-lisp/org/ob-scheme hides /usr/share/emacs/25.0.50/lisp/org/ob-scheme
/usr/share/emacs/site-lisp/org/ob-scala hides /usr/share/emacs/25.0.50/lisp/org/ob-scala
/usr/share/emacs/site-lisp/org/ob-sass hides /usr/share/emacs/25.0.50/lisp/org/ob-sass
/usr/share/emacs/site-lisp/org/ob-R hides /usr/share/emacs/25.0.50/lisp/org/ob-R
/usr/share/emacs/site-lisp/org/ob-picolisp hides /usr/share/emacs/25.0.50/lisp/org/ob-picolisp
/usr/share/emacs/site-lisp/org/ob-plantuml hides /usr/share/emacs/25.0.50/lisp/org/ob-plantuml
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Features:
(shadow org-bullets cdlatex texmathp reftex reftex-vars org-rmail org-mhe
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Memory information:
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 (heap 1024 70530 2355))

-- 
A clever person solves a problem. A wise person avoids it

bug#21267: 25.0.50; error when installing org from dirty Emacs

[Glenn Morris]

Rasmus wrote:

> 1. Start emacs -Q to use build in version of org 
> 2. Load org: (mapc 'require '(org ob ox-latex))
> 3. Install org 8.3 via gelpa

This is https://debbugs.gnu.org/10125 and the solution is not to do step 2.

bug#21267: 25.0.50; error when installing org from dirty Emacs

[Rasmus]

Glenn Morris <rgm@gnu.org> writes:

> Rasmus wrote:
>
>> 1. Start emacs -Q to use build in version of org 
>> 2. Load org: (mapc 'require '(org ob ox-latex))
>> 3. Install org 8.3 via gelpa
>
> This is https://debbugs.gnu.org/10125 and the solution is not to do step 2.

But Stefan says this shuldn't happen in Emacs-25:

    http://permalink.gmane.org/gmane.emacs.help/106561

Rasmus

-- 
ツ

bug#21267: 25.0.50; error when installing org from dirty Emacs

[Eli Zaretskii]

> From: Rasmus <rasmus@gmx.us>
> Date: Sat, 15 Aug 2015 18:31:34 +0200
> 
> 1. Start emacs -Q to use build in version of org 
> 2. Load org: (mapc 'require '(org ob ox-latex))
> 3. Install org 8.3 via gelpa
> 4. Start with my "normal" emacs instance and M-x orgstruct.
>    I have not found a way to trigger this from a clean emacs...
> 
> my version of emacs is GNU Emacs 25.0.50.1 (x86_64-unknown-linux-gnu,
> GTK+ Version 3.16.6) of 2015-08-11 on W530.
> [...]
> Debugger entered--Lisp error: (invalid-function org-babel-header-args-safe-fn)
> [...]
>   eval-after-load-helper("/home/rasmus/.emacs.d/elpa/org-20150810/ob.elc")
>   run-hook-with-args(eval-after-load-helper "/home/rasmus/.emacs.d/elpa/org-20150810/ob.elc")
>   do-after-load-evaluation("/home/rasmus/.emacs.d/elpa/org-20150810/ob.elc")
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
What's this about?  Are you loading parts of Org in your init files,
directly or indirectly, and is the version of Org in
.emacs.d/elpa/org-20150810/ the one you call "org 8.3" above or some
older version?

> Load-path shadows:
> [...]
> /usr/share/emacs/site-lisp/org/ox-texinfo hides /usr/share/emacs/25.0.50/lisp/org/ox-texinfo
> /usr/share/emacs/site-lisp/org/ox-odt hides /usr/share/emacs/25.0.50/lisp/org/ox-odt

And these say you have one more version of Org, under
/usr/share/emacs/site-lisp/.  What version of Org is that?

bug#21267: 25.0.50; error when installing org from dirty Emacs

[Rasmus]

Eli Zaretskii <eliz@gnu.org> writes:

>> From: Rasmus <rasmus@gmx.us>
>> Date: Sat, 15 Aug 2015 18:31:34 +0200
>
>> 
>> 1. Start emacs -Q to use build in version of org 
>> 2. Load org: (mapc 'require '(org ob ox-latex))
>> 3. Install org 8.3 via gelpa
>> 4. Start with my "normal" emacs instance and M-x orgstruct.
>>    I have not found a way to trigger this from a clean emacs...
>> 
>> my version of emacs is GNU Emacs 25.0.50.1 (x86_64-unknown-linux-gnu,
>> GTK+ Version 3.16.6) of 2015-08-11 on W530.
>> [...]
>> Debugger entered--Lisp error: (invalid-function org-babel-header-args-safe-fn)
>> [...]
>>   eval-after-load-helper("/home/rasmus/.emacs.d/elpa/org-20150810/ob.elc")
>>   run-hook-with-args(eval-after-load-helper "/home/rasmus/.emacs.d/elpa/org-20150810/ob.elc")
>>   do-after-load-evaluation("/home/rasmus/.emacs.d/elpa/org-20150810/ob.elc")
>     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> What's this about?  Are you loading parts of Org in your init files,
> directly or indirectly, and is the version of Org in
> .emacs.d/elpa/org-20150810/ the one you call "org 8.3" above or some
> older version?

Yeah that version is version 8.3.1 from GELPA (in list-packages the
version is called "20150810" ).

>> Load-path shadows:
>> [...]
>> /usr/share/emacs/site-lisp/org/ox-texinfo hides
>> /usr/share/emacs/25.0.50/lisp/org/ox-texinfo
>> /usr/share/emacs/site-lisp/org/ox-odt hides
>> /usr/share/emacs/25.0.50/lisp/org/ox-odt
>
> And these say you have one more version of Org, under
> /usr/share/emacs/site-lisp/.  What version of Org is that?

That's the development version, so version 8.3.1 plus a couple of commits.
I have removed the site-lisp version now.

Here's the backtrace with the following receipt:

1. Start emacs -Q to use build in version of org 
2. Load org: (mapc 'require '(org ob ox-latex))
3. Install org 8.3 via GELPA (version called "20150810")
4. Start with my emacs -q.  Evaluate the following:

       (package-initialize)
       (with-eval-after-load 'ob
         (org-babel-do-load-languages 'org-babel-load-languages '((R . t))))
       (require 'ob)

Backtrace: 

Debugger entered--Lisp error: (invalid-function org-babel-header-args-safe-fn)
  org-babel-header-args-safe-fn((:cache :colnames :comments :exports :epilogue :hlines :noeval :noweb :noweb-ref :noweb-sep :padline :prologue :rownames :sep :session :tangle :wrap (:eval "never" "query") (:results lambda (str) (not (string-match "file" str))) :width :height :bg :units :pointsize :antialias :quality :compression :res :type :family :title :fonts :version :paper :encoding :pagecentre :colormodel :useDingbats :horizontal))
  byte-code("\301\302\303\304\b!#\210\305\306\307\310\311\312\313\314\315\316&	\207" [ob-R-safe-header-args put org-babel-default-header-args:R safe-local-variable org-babel-header-args-safe-fn custom-declare-variable org-babel-R-command "R --slave --no-save" "Name of command to use for executing R code." :group org-babel :version "24.1" :type string] 10)
  require(ob-R)
  #[(pair) "\bA\303\b@!\211\203