emacs-orgmode@gnu.org archives
 help / color / mirror / code / Atom feed
From: Roger Mason <rmason@mun.ca>
To: Org-Mode <emacs-orgmode@gnu.org>
Subject: Troublesome python block
Date: Wed, 11 Oct 2017 12:55:35 -0230	[thread overview]
Message-ID: <y65vajlk8pc.fsf@mun.ca> (raw)

hello,

This python block:

#+BEGIN_SRC python :session true :results output
  import numpy as np
  from ase import Atoms
  from ase.calculators.gulp import GULP, Conditions

  quartz = Atoms(symbols='Si3O6', pbc=np.array([True,True,True], dtype=bool),
           cell=np.array([[4.916, 0.0, 0.0], [-2.4579999999999993, 4.257380885004301, 0.0], [0.0, 0.0, 5.4054]]),
	   positions=np.array([[ 2.3016712,   0.,      1.80161982],
                      [-1.1508356, 1.99330573, 3.60341982],
                      [ 1.3071644, 2.26407515, 5.40521982],
                      [ 1.3767258, 1.13288905, 1.15189074],
                      [ 3.2465264, 0.62583499, 2.95369074],
                      [ 2.7507478, 2.49865684, 4.75549074],
                      [ 0.2927478, 1.75872404, 4.25350926],
                      [-1.0812742, 3.12449183, 2.45170926],
                      [ 0.7885264, 3.63154589, 0.64990926]]))
#+END_SRC

produces this output:

#+RESULTS:
#+begin_example
Python 2.7.13 (default, Jul  2 2017, 01:20:25) 
[GCC 4.2.1 Compatible FreeBSD Clang 3.4.1 (tags/RELEASE_34/dot1-final 208032)] on freebsd10
Type "help", "copyright", "credits" or "license" for more information.
python.el: native completion setup loaded
and
as
assert
break
class
continue
def
del
elif
else
....[SNIPPED]....
AttributeError
OverflowError

0__dummy_completion__  1__dummy_completion__
#+end_example

The same python script produces no errors in a python interpreter
started from the command line and it reports no errors when run as
'python twaddle.py'.

Any help in debugging this will be much appreciated.

Roger

Org mode version 9.0.3 (release_9.0.3-170-gfed1cf @
/home/rmason/.emacs.d/org-git/org-mode/lisp/)
GNU Emacs 25.2.1 (i386-portbld-freebsd10.3, GTK+ Version 3.22.15) of 2017-07-03
Python 2.7.13 (default, Jul  2 2017, 01:20:25) 
[GCC 4.2.1 Compatible FreeBSD Clang 3.4.1 (tags/RELEASE_34/dot1-final 208032)] on freebsd10

             reply	other threads:[~2017-10-11 15:25 UTC|newest]

Thread overview: 3+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2017-10-11 15:25 Roger Mason [this message]
2017-10-11 16:13 ` Troublesome python block Kyle Meyer
2017-10-11 16:35 ` Kaushal Modi

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

  List information: https://www.orgmode.org/

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=y65vajlk8pc.fsf@mun.ca \
    --to=rmason@mun.ca \
    --cc=emacs-orgmode@gnu.org \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body. 
Code repositories for project(s) associated with this public inbox

	https://git.savannah.gnu.org/cgit/emacs/org-mode.git

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).