From: tsd@tsdye.com (Thomas S. Dye)
To: "Charles C. Berry" <ccberry@ucsd.edu>
Cc: emacs-orgmode@gnu.org
Subject: Re: Problem with R source blocks
Date: Fri, 12 Jun 2015 11:55:08 -1000 [thread overview]
Message-ID: <m2h9qch9s3.fsf@tsdye.com> (raw)
In-Reply-To: <alpine.OSX.2.11.1506121133200.446@charles-berrys-macbook.local> (Charles C. Berry's message of "Fri, 12 Jun 2015 11:50:09 -0700")
Hi Chuck,
"Charles C. Berry" <ccberry@ucsd.edu> writes:
> The error messages are coming from R. cbind will say:
>
> : Error in data.frame(..., check.names = FALSE) :
> : arguments imply differing number of rows: 2, 3
I think the problem is in ggplot2, rather than my for loop:
,---------------------------------------------------------------------------
| [1] "ERROR : arguments imply differing number of rows: 76, 69"
| Warning messages:
| 1: In loop_apply(n, do.ply) :
| Removed 3 rows containing missing values (position_stack).
| 2: In loop_apply(n, do.ply) :
| Removed 1 rows containing missing values (position_stack).
| 3: In loop_apply(n, do.ply) :
| Removed 3 rows containing missing values (position_stack).
| null device
| 1
| > [1] "org_babel_R_eoe"
| > summary(bcal.df$label)
| 50-50-17-01088 Hapaiali`i KAL-1 Makolea KH2-2
| 100 60 82 69 72
| KAL-26 KAL-27 KHO-1 KOL-2 MKI-122
| 79 72 65 63 54
| MKI-123 MKI-124 MKI-125 KH1-3 KAL-24
| 62 69 65 65 57
| Cook
| 41
`---------------------------------------------------------------------------
Note that the warnings removed 7 rows, which is the difference pointed
out by the error.
I don't know what position_stack might be, but it doesn't map directly
to the data frame I've constructed, which lacks an entry with 76 rows.
I'm guessing this brouhaha has to do with facet_wrap.
In any case, Org Babel seems to be behaving correctly.
I've had this code around for years and have run it without problem many
hundreds of times.
Is ess a potential source of the problem? I upgraded that recently.
Thanks for your help,
Tom
--
Thomas S. Dye
http://www.tsdye.com
next prev parent reply other threads:[~2015-06-12 21:55 UTC|newest]
Thread overview: 6+ messages / expand[flat|nested] mbox.gz Atom feed top
2015-06-11 23:12 Problem with R source blocks Thomas S. Dye
2015-06-12 18:50 ` Charles C. Berry
2015-06-12 21:55 ` Thomas S. Dye [this message]
2015-06-12 22:33 ` Charles C. Berry
2015-06-12 23:54 ` Thomas S. Dye
2015-06-13 0:26 ` Thomas S. Dye
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
List information: https://www.orgmode.org/
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=m2h9qch9s3.fsf@tsdye.com \
--to=tsd@tsdye.com \
--cc=ccberry@ucsd.edu \
--cc=emacs-orgmode@gnu.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
Code repositories for project(s) associated with this public inbox
https://git.savannah.gnu.org/cgit/emacs/org-mode.git
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).