From mboxrd@z Thu Jan 1 00:00:00 1970 From: Rainer M Krug Subject: Re: Org and Citations / References / Bibliography Date: Fri, 06 Nov 2015 10:42:39 +0100 Message-ID: References: Mime-Version: 1.0 Content-Type: multipart/signed; boundary="=-=-="; micalg=pgp-sha256; protocol="application/pgp-signature" Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:47236) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1ZudXo-0004PI-0o for emacs-orgmode@gnu.org; Fri, 06 Nov 2015 04:42:53 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1ZudXk-0000oA-4Q for emacs-orgmode@gnu.org; Fri, 06 Nov 2015 04:42:51 -0500 Received: from mail-wi0-f171.google.com ([209.85.212.171]:37213) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1ZudXj-0000o6-Qn for emacs-orgmode@gnu.org; Fri, 06 Nov 2015 04:42:48 -0500 Received: by wicfv8 with SMTP id fv8so25278861wic.0 for ; Fri, 06 Nov 2015 01:42:47 -0800 (PST) In-Reply-To: (John Kitchin's message of "Thu, 05 Nov 2015 06:56:56 -0500") List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: John Kitchin Cc: emacs-orgmode@gnu.org --=-=-= Content-Type: text/plain Content-Transfer-Encoding: quoted-printable John Kitchin writes: > Can you send me a minimal org and bib file you are using that doesn't > work, and how you have it set up? > > Does helm-bibtex work for you? > > We use org-ref on a daily basis, so it should work. It does now. I went through the setup process slowly again using the README.org and the org-ref.org in [[https://github.com/jkitchin/org-ref]] as guidelines and it worked. But I could not install any of the "useful libraries", as none of them seems to be on melpa et al? Thanks a lot - and org-ref looks really great. Cheers, Rainer P.S.: Just for reference: I now have the following in my emacs.org file: *** org-ref See [[https://www.youtube.com/watch?v=3DJyvpSVl4_dg][org-ref video]] and [[= https://github.com/jkitchin/jmax/blob/master/org-ref.org][org-rel github si= te]] for further details (John Kitchin) #+begin_src emacs-lisp (use-package ebib :ensure t ) (use-package dash :ensure t ) (use-package s :ensure t ) (use-package f :ensure t ) (use-package hydra :ensure t ) (use-package org-ref :ensure f :load-path "~/.emacs.d/org-ref" :config ;; README.org in org-ref repo for the why (setq reftex-default-bibliography '("~/Documents/Mendeley/bibliography.bi= b")) ;; ;; see org-ref for use of these variables (setq org-ref-bibliography-notes "~/Documents/Mendeley/notes.org" org-ref-default-bibliography '("~/Documents/Mendeley/bibliography.b= ib") org-ref-pdf-directory "~/iCloud/Mendeley/") ;; (setq helm-bibtex-bibliography "~/.emacs.d/org-ref/test.bib") (setq helm-bibtex-library-path "~/Dropbox/bibliography/bibtex-pdfs") ;; ;; open pdf with system pdf viewer (works on mac) (setq helm-bibtex-pdf-open-function (lambda (fpath) (start-process "open" "*open*" "open" fpath))) =20=20 ;; :bind ;; You may want to set some convenient keys for working in your bibtex fi= le: ;; ("f10" . org-ref-open-bibtex-notes) ;; ("f11" . org-ref-open-bibtex-pdf) ;; ("f12" . org-ref-open-in-browser) ) ;; optional but very useful libraries in org-ref (use-package doi-utils :disabled t :ensure t ) (use-package jmax-bibtex :disabled t :ensure t ) (use-package pubmed :disabled t :ensure t ) (use-package arxiv :disabled t :ensure t ) (use-package sci-id :disabled t :ensure t ) #+end_src > > Rainer M Krug writes: > >> Hi >> >> I have been following the whole discussion about the implementation of a >> good citation system in org, which is really necessary. >> >> At the moment I am again at that point where I would like to include >> citations in a document and I don't get any citation system to work - >> neither org-ref[1] nor org's org-reftex-citation nor reftex >> citation. None of these find anything in a .bib file, I have no overview >> where I have to specify the bib file and I am frustrated, because it >> worked some months ago. >> >> I would very much like to use org-ref, but I don't even get the supplied >> examples to work, i.e. find something from the .bib file. >> >> Any suggestions what I can do, any simple / minimalistic init.el file >> which I can merge into my config? >> >> Thanks, >> >> Rainer >> >> >> Footnotes: >> [1] http://kitchingroup.cheme.cmu.edu/blog/2014/05/13/Using-org-ref-for= -citations-and-references/ > > -- > Professor John Kitchin > Doherty Hall A207F > Department of Chemical Engineering > Carnegie Mellon University > Pittsburgh, PA 15213 > 412-268-7803 > @johnkitchin > http://kitchingroup.cheme.cmu.edu =2D-=20 Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology,= UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10 27 44 Cell: +33 - (0)6 85 62 59 98 Fax : +33 - (0)9 58 10 27 44 Fax (D): +49 - (0)3 21 21 25 22 44 email: Rainer@krugs.de Skype: RMkrug PGP: 0x0F52F982 --=-=-= Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQEcBAEBCAAGBQJWPHYTAAoJENvXNx4PUvmCub8H/R/M1kPIgMaxzSO4T0whM6o4 WksKy3W7LoGQ/QOf8z/U0H8FFlse3YSoutbQHeyXNeY2YCkLVrVoVzkW/rL6NHGl 3HFsSv8EwbMnIFu7jlGa2cQF2y8XQXb/mTHFJ1HrI5hm9Ag415I1udAM2xWHD1ZO Do0ShcNsYCrGo4nGPYl9Ztd50Uo/XgHrJP6USMGijJ0BmJ5746ErMzMrJMYpJ+Dt j5FowHmPqMsq82MBvY/CjfCtqqqXqefwPuqRN2+ht/dzGJu9Y1u+IUyUqxfZ9GNJ edxRLlLYXZgl6M96UOuhBTbM2ZEA0xB2EVuvNslUa1h2CefRUKaw7U9Gbbupyz8= =bYzI -----END PGP SIGNATURE----- --=-=-=--