Any task which is a habit is listed in a special portion of the agenda for
consistency tracking. This is useful and convenient. However, this
apparently conflicts with scheduling the habit for a certain time. For
example, if I want to go for a run on Tuesday at 5pm, I would like to have
the option to schedule my running habit for 5pm on Tuesday and have it
appear in the agenda at that position.

Ideally I would like to toggle the features of the habit module on and off,
so that in the agenda view, habits are treated either as normal tasks at a
particular time, or they appear in the consistency tracker window rather
than the schedule. Is there a way to accomplish this?

Note that I don't want to filter (remove) the habits from the agenda. I am
familiar with this functionality.