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Tue, 09 Jul 2024 01:39:15 -0700 (PDT) MIME-Version: 1.0 From: Matthew Clarke Date: Tue, 9 Jul 2024 09:38:38 +0100 Message-ID: Subject: [BUG] Org element cache error in indirect buffer [9.6.15 (release_9.6.15 @ c:/Users/User/Downloads/emacs-master-x86_64-full/share/emacs/30.0.50/lisp/org/)] To: emacs-orgmode@gnu.org Content-Type: multipart/alternative; boundary="000000000000006730061ccc770b" Received-SPF: pass client-ip=2a00:1450:4864:20::62e; envelope-from=matthew.a.clarke1991@gmail.com; helo=mail-ej1-x62e.google.com X-Spam_score_int: -17 X-Spam_score: -1.8 X-Spam_bar: - X-Spam_report: (-1.8 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_ENVFROM_END_DIGIT=0.25, FREEMAIL_FROM=0.001, HTML_MESSAGE=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Mailman-Approved-At: Tue, 09 Jul 2024 09:42:29 -0400 X-BeenThere: emacs-orgmode@gnu.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+larch=yhetil.org@gnu.org Sender: emacs-orgmode-bounces+larch=yhetil.org@gnu.org X-Migadu-Country: US X-Migadu-Flow: FLOW_IN X-Spam-Score: -9.74 X-Migadu-Queue-Id: C063B6E044 X-Migadu-Scanner: mx10.migadu.com X-Migadu-Spam-Score: -9.74 X-TUID: g6lUWjAKpgGb --000000000000006730061ccc770b Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable When using an indirect buffer I get the warning Warning (org-element-cache): org-element--cache: Org parser error in PIBBSS.org<2>::488418. Resetting. The error was: (error "Invalid search bound (wrong side of point)") Backtrace: " backtrace-to-string(nil) org-element-at-point(488418) org-element-cache-map(#f(compiled-function (el) #)) org-get-buffer-tags() org-set-tags-command(nil) funcall-interactively(org-set-tags-command nil) command-execute(org-set-tags-command) " I am also experiencing, in indirect buffers, the inability to unfold org-headings, and problems where rearranging them leaves sub-headings behind, which may be related Best wishes, Matthew Clarke Emacs : GNU Emacs 30.0.50 (build 1, x86_64-w64-mingw32) Package: Org mode version 9.6.15 (release_9.6.15 @ c:/Users/User/Downloads/emacs-master-x86_64-full/share/emacs/30.0.50/lisp/o= rg/) current state: =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D (setq org-refile-target-verify-function 'my/verify-refile-target org-persist-before-write-hook '(org-element--cache-persist-before-write) org-habit-show-habits-only-for-today nil org-html-format-headline-function 'org-html-format-headline-default-function org-reveal-start-hook '(org-decrypt-entry) org-html-format-drawer-function #[514 "\207" [] 3 "\n\n(fn NAME CONTENTS)"= ] org-deadline-warning-days 30 org-refile-allow-creating-parent-nodes 'confirm org-latex-format-inlinetask-function 'org-latex-format-inlinetask-default-function org-agenda-custom-commands '(("c" "Super Agenda" agenda (org-super-agenda-mode) ((org-super-agenda-groups '((:name "Meetings" :time-grid t) (:name "Due today" :deadline today) (:name "Overdue" :deadline past) (:name "Due soon" :deadline future) (:name "Next Items" :todo ("NEXT")) (:name "Done" :todo "DONE" :order 9) (:name "Today" :tag "today") (:name "In progress" :todo "IN-PROGRESS") (:name "Project" :tag "project"= ) (:name "Important" :priority "A") (:name "Scheduled earlier" :scheduled past) (:name "Habits" :habit t) (:name "Low priority" :priority "C" :face (:foreground "gray")) (:name "Other TODO" :todo "TODO" :order 8)) ) ) (org-agenda nil "a")) ) org-speed-command-hook '(org-speed-command-activate org-babel-speed-command-activate) org-persist-after-read-hook '(org-element--cache-persist-after-read) org-fold-catch-invisible-edits 'error org-confirm-elisp-link-function 'yes-or-no-p org-journal-mode-hook '(turn-on-visual-line-mode org-journal-default-enable-encryption) org-log-done t org-latex-format-headline-function 'org-latex-format-headline-default-function org-latex-format-drawer-function #[514 "\207" [] 3 "\n\n(fn _ CONTENTS)"] org-mode-hook '(er/add-org-mode-expansions remove-electric-indent-mode #[0 "\301\211 \207" [imenu-create-index-function org-imenu-get-tree] 2] my-org-mode-hook visual-line-mode #[0 "\300\301\302\303\304$\207" [add-hook change-major-mode-hook org-fold-show-all append local] 5] #[0 "\300\301\302\303\304$\207" [add-hook change-major-mode-hook org-babel-show-result-all append local] 5] org-babel-result-hide-spec org-babel-hide-all-hashes) org-hierarchical-todo-statistics nil org-capture-templates '(("t" "TODO" entry (file "c:/Users/User/Documents/Github/Log/Refile.org") "* TODO %? \n" :empty-lines 1) ("s" "Scheduled TODO" entry (file "c:/Users/User//Documents/Github/Log/Refile.org") "* TODO %? \nSCHEDULED: %^t\n" :empty-lines 1) ("d" "Deadline" entry (file "c:/Users/User//Documents/Github/Log/Refile.org") "* TODO %? \n DEADLINE: %^t" :empty-lines 1) ("p" "Priority" entry (file "c:/Users/User//Documents/Github/Log/Refile.org") "* TODO [#A] %? \n SCHEDULED: %^t") ("a" "Appointment" entry (file "c:/Users/User//Documents/Github/Log/Refile.org") "* %? \n %^t") ("l" "Link" entry (file "c:/Users/User//Documents/Github/Log/Refile.org") "* TODO %a %?\nSCHEDULED: %(org-insert-time-stamp (org-read-date nil t \"+0d\"))\n") ("n" "Note" entry (file "c:/Users/User//Documents/Github/Log/Refile.org") "* %?\n" :empty-lines 1) ("r" "Repeating Meeting" entry (file "c:/Users/User//Documents/Github/Log/Refile.org") "* [/] %^{Name of Job} %^{Date of meeting}t \n** TODO Actual \n** TODO [/] Prep \nSCHEDULED: %^{Date of prep}t\n*** TODO Get old and next qs \n** TODO [/] Qs \n** TODO [/] Tasks - %\\1 :triage: \nSCHEDULED: %^{Date of tasks}t\n" :empty-lines 1) ("j" "Job application" entry (file "c:/Users/User//Documents/Github/Log/Refile.org") "* TODO [/] %^{Name of Job} :project: \nSCHEDULED: %^{Schedule}t DEADLINE: %^{Deadline}t\n** Website: %^{Website} \n** TODO [/] Prep \n*** TODO What docs needed" :empty-lines 1) ) org-refile-targets '((org-agenda-files :maxlevel . 12)) org-confirm-shell-link-function 'yes-or-no-p org-odt-format-headline-function 'org-odt-format-headline-default-function org-archive-hook '(org-attach-archive-delete-maybe) org-blocker-hook '(org-block-todo-from-children-or-siblings-or-parent) org-super-agenda-mode t org-journal-encrypt-journal t org-metaup-hook '(org-babel-load-in-session-maybe) org-refile-use-cache t org-occur-hook '(org-first-headline-recenter) org-enforce-todo-dependencies t org-babel-R-command "C:/Progra~1/R/R-4.0.5/bin/R --slave --no-save" org-html-format-inlinetask-function 'org-html-format-inlinetask-default-function org-table-convert-region-max-lines 2999 org-ascii-format-drawer-function #[771 " \207" [] 4 "\n\n(fn NAME CONTENTS WIDTH)"] org-fold-reveal-start-hook '(org-decrypt-entry) org-link-parameters '(("attachment" :follow org-attach-follow :complete org-attach-complete-link) ("id" :follow org-id-open) ("file+sys") ("file+emacs") ("shell" :follow org-link--open-shell) ("news" :follow #[514 "\301\300\302 Q \"\207" ["news" browse-url ":"] 6 "\n\n(fn URL ARG)"]) ("mailto" :follow #[514 "\301\300\302 Q \"\207" ["mailto" browse-url ":"] 6 "\n\n(fn URL ARG)"]) ("https" :follow #[514 "\301\300\302 Q \"\207" ["https" browse-url ":"] 6 "\n\n(fn URL ARG)"]) ("http" :follow #[514 "\301\300\302 Q \"\207" ["http" browse-url ":"] 6 "\n\n(fn URL ARG)"]) ("ftp" :follow #[514 "\301\300\302 Q \"\207" ["ftp" browse-url ":"] 6 "\n\n(fn URL ARG)"]) ("help" :follow org-link--open-help :store org-link--store-help) ("file" :complete org-link-complete-file) ("elisp" :follow org-link--open-elisp)) org-refile-use-outline-path t org-cycle-tab-first-hook '(org-babel-hide-result-toggle-maybe org-babel-header-arg-expand) org-agenda-before-write-hook '(org-agenda-add-entry-text) org-metadown-hook '(org-babel-pop-to-session-maybe) org-tab-first-hook '(org-babel-hide-result-toggle-maybe org-babel-header-arg-expand) org-export-backends '(ascii html odt latex md) org-startup-folded t org-babel-pre-tangle-hook '(save-buffer) org-export-before-parsing-hook '(org-attach-expand-links) org-link-shell-confirm-function 'yes-or-no-p org-fold-core-isearch-open-function 'org-fold-core--isearch-reveal org-tags-exclude-from-inheritance '("project") outline-isearch-open-invisible-function 'outline-isearch-open-invisible org-latex-classes '(("beamer" "\\documentclass[presentation]{beamer}" ("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . "\\subsubsection*{%s}")) ("article" "\\documentclass[11pt]{article}" ("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . "\\subsubsection*{%s}") ("\\paragraph{%s}" . "\\paragraph*{%s}") ("\\subparagraph{%s}" . "\\subparagraph*{%s}")) ("report" "\\documentclass[11pt]{report}" ("\\part{%s}" . "\\part*{%s}") ("\\chapter{%s}" . "\\chapter*{%s}") ("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . "\\subsubsection*{%s}")) ("book" "\\documentclass[11pt]{book}" ("\\part{%s}" . "\\part*{%s}") ("\\chapter{%s}" . "\\chapter*{%s}") ("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . "\\subsubsection*{%s}")) ) org-src-mode-hook '(org-src-babel-configure-edit-buffer org-src-mode-configure-edit-buffer) org-agenda-span 1 org-fold-core-style 'overlays org-babel-load-languages '((R . t)) org-modules '(org-habit) org-agenda-loop-over-headlines-in-active-region nil org-agenda-files '("c:/Users/User/Documents/GitHub/Log/LabMeet&Jclub.org" "c:/Users/User/Documents/GitHub/Log/ALPHACLOCK.org" "c:/Users/User/Documents/GitHub/Log/PaperstoFile.org" "c:/Users/User/Documents/GitHub/Log/Refile.org" "c:/Users/User/Documents/GitHub/Log/ProjectIdeas.org" "c:/Users/User/Documents/GitHub/Log/PeerReviews.org" "c:/Users/User/Documents/GitHub/Log/Moving.org" "c:/Users/User/Documents/GitHub/Log/postdoc.org" "c:/Users/User/Documents/GitHub/Log/Conferences.org" "c:/Users/User/Documents/GitHub/Log/Contingencies.org" "c:/Users/User/Documents/GitHub/Log/BATCH.org" "c:/Users/User/Documents/GitHub/Log/Viva.org" "c:/Users/User/Documents/GitHub/Log/Lung.org" "c:/Users/User/Documents/GitHub/Log/Order.org" "c:/Users/User/Documents/GitHub/Log/Thesis.org" "c:/Users/User/Documents/GitHub/Log/Work.org") org-link-elisp-confirm-function 'yes-or-no-p org-outline-path-complete-in-steps nil org-startup-indented t org-odt-format-inlinetask-function 'org-odt-format-inlinetask-default-function org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-show-empty-lines org-cycle-optimize-window-after-visibility-chang= e org-cycle-display-inline-images) org-journal-dir "c:/Users/User/Documents/Github/journal/" org-persist-before-read-hook '(org-element--cache-persist-before-read) org-ascii-format-inlinetask-function 'org-ascii-format-inlinetask-default org-odt-format-drawer-function #[514 "\207" [] 3 "\n\n(fn NAME CONTENTS)"] org-agenda-dim-blocked-tasks nil ) --=20 Research Fellow Jasmin Fisher Laboratory UCL Cancer Institute University College London, 72 Huntley Street , London, WC1E 6BT Lab website Personal website Linkedin --000000000000006730061ccc770b Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable
When using an indirect buffer I get the warning

War= ning (org-element-cache): org-element--cache: Org parser error in PIBBSS.or= g<2>::488418. Resetting.
=C2=A0The error was: (error "Invalid= search bound (wrong side of point)")
=C2=A0Backtrace:
" = =C2=A0backtrace-to-string(nil)
=C2=A0 org-element-at-point(488418)
= =C2=A0 org-element-cache-map(#f(compiled-function (el) #<bytecode 0x8429= 1860d42dfa5>))
=C2=A0 org-get-buffer-tags()
=C2=A0 org-set-tags-co= mmand(nil)
=C2=A0 funcall-interactively(org-set-tags-command nil)
=C2= =A0 command-execute(org-set-tags-command)
"

I am also experi= encing, in indirect buffers, the inability to unfold
org-headings, and p= roblems where rearranging them leaves sub-headings
behind, which may be = related

Best wishes,

Matthew Clarke


Emacs =C2=A0: = GNU Emacs 30.0.50 (build 1, x86_64-w64-mingw32)
Package: Org mode versio= n 9.6.15 (release_9.6.15 @ c:/Users/User/Downloads/emacs-master-x86_64-full= /share/emacs/30.0.50/lisp/org/)

current state:
=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D
(setq
=C2=A0org-refile-target-verify-functio= n 'my/verify-refile-target
=C2=A0org-persist-before-write-hook '= (org-element--cache-persist-before-write)
=C2=A0org-habit-show-habits-on= ly-for-today nil
=C2=A0org-html-format-headline-function 'org-html-f= ormat-headline-default-function
=C2=A0org-reveal-start-hook '(org-de= crypt-entry)
=C2=A0org-html-format-drawer-function #[514 "\207"= ; [] 3 "\n\n(fn NAME CONTENTS)"]
=C2=A0org-deadline-warning-da= ys 30
=C2=A0org-refile-allow-creating-parent-nodes 'confirm
=C2= =A0org-latex-format-inlinetask-function 'org-latex-format-inlinetask-de= fault-function
=C2=A0org-agenda-custom-commands '(("c" &qu= ot;Super Agenda" agenda (org-super-agenda-mode)
=C2=A0 =C2=A0 = =C2=A0 ((org-super-agenda-groups
'((:name "Meetings" = :time-grid t) (:name "Due today" :deadline today) (:name "Ov= erdue" :deadline past)
=C2=A0 (:name "Due soon" :dea= dline future) (:name "Next Items" :todo ("NEXT"))
= =C2=A0 (:name "Done" :todo "DONE" :order 9) (:name &= quot;Today" :tag "today")
=C2=A0 (:name "In pro= gress" :todo "IN-PROGRESS") (:name "Project" :tag = "project")
=C2=A0 (:name "Important" :priority = "A") (:name "Scheduled earlier" :scheduled past) (:name= "Habits" :habit t)
=C2=A0 (:name "Low priority"= ; :priority "C" :face (:foreground "gray"))
=C2= =A0 (:name "Other TODO" :todo "TODO" :order 8))
= )
)
=C2=A0 =C2=A0 =C2=A0 (org-agenda nil "a"))
= =C2=A0 =C2=A0 =C2=A0)
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=C2=A0)

--

Research Fellow

Jasmin Fisher Laboratory

UCL Cancer Institute

University College London, 72 Huntley Stre= et, London, WC1E 6BT=C2=A0


Lab website=C2=A0 =C2=A0=C2=A0Personal website=C2=A0 =C2=A0 Linkedin

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