From mboxrd@z Thu Jan  1 00:00:00 1970
From: stardiviner <numbchild@gmail.com>
Subject: How to use xml src block as data input?
Date: Fri, 30 Mar 2018 13:59:09 +0800
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-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

I have a xml src block like this:

#+NAME: xml-sample
#+begin_src xml
<?xml version="1.0" encoding="utf-8"?>
<feed xmlns="http://www.w3.org/2005/Atom">

  <title>Example Feed</title>
  <link href="http://example.org/"/>
  <updated>2003-12-13T18:30:02Z</updated>
  <author>
    <name>John Doe</name>
  </author>
  <id>urn:uuid:60a76c80-d399-11d9-b93C-0003939e0af6</id>

  <entry>
    <title>Atom-Powered Robots Run Amok</title>
    <link rel="alternate" href="http://example.org/2003/12/13/atom03"/>
    <id>urn:uuid:1225c695-cfb8-4ebb-aaaa-80da344efa6a</id>
    <updated>2003-12-13T18:30:02Z</updated>
    <summary>Some text.</summary>
  </entry>

</feed>
#+end_src

How can I use this xml data as input in another src block?

I tried like this:

#+begin_src emacs-lisp :var sample=xml-sample
(elfeed-xml-parse-region sample)
#+end_src

But it reports no org-babel-execute for xml!
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From mboxrd@z Thu Jan  1 00:00:00 1970
From: stardiviner <numbchild@gmail.com>
Subject: Re: How to use xml src block as data input?
Date: Sun, 29 Apr 2018 22:59:17 +0800
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Is there somebody have any idea or hints about this question?

=2D --=20
[ stardiviner ] don't need to convince with trends.
       Blog: https://stardiviner.github.io/
       IRC(freenode): stardiviner
       GPG: F09F650D7D674819892591401B5DF1C95AE89AC3
=20=20=20=20=20=20
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From mboxrd@z Thu Jan  1 00:00:00 1970
From: Bastien <bzg@gnu.org>
Subject: Re: How to use xml src block as data input?
Date: Sun, 29 Apr 2018 17:14:57 +0200
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Hi,

stardiviner <numbchild@gmail.com> writes:

> How can I use this xml data as input in another src block?

You would need to enclose the xml code within #+begin_example instead
of #+begin_src.  Also, elfeed-xml-parse-region will not work on a
string, it expects other arguments, so you might need to write your
own parsing function, maybe based on libxml-parse-xml-region if your
version of Emacs has libxml support.

HTH,

-- 
 Bastien

From mboxrd@z Thu Jan  1 00:00:00 1970
From: John Kitchin <jkitchin@andrew.cmu.edu>
Subject: Re: How to use xml src block as data input?
Date: Sun, 29 Apr 2018 10:30:21 -0700
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Here is one approach:

#+name: xml-data
#+BEGIN_EXAMPLE
<note>
<to>Tove</to>
<from>Jani</from>
<heading>Reminder</heading>
<body>Don't forget me this weekend!</body>
</note>
#+END_EXAMPLE


#+BEGIN_SRC python :var data=xml-data
import xml.etree.ElementTree as ET
root = ET.fromstring(data)
for child in root:
    print(child.tag, child.attrib)
#+END_SRC

#+RESULTS:
: to {}
: from {}
: heading {}
: body {}

#+BEGIN_SRC emacs-lisp :var data=xml-data
(with-temp-buffer (insert data) (libxml-parse-xml-region (point-min) (point-max)))
#+END_SRC

#+RESULTS:
| note | nil | (to nil Tove) | (from nil Jani) | (heading nil Reminder) | (body nil Don't forget me this weekend!) |



stardiviner writes:

> -----BEGIN PGP SIGNED MESSAGE-----
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>
>
> Is there somebody have any idea or hints about this question?
>
> - --
> [ stardiviner ] don't need to convince with trends.
>        Blog: https://stardiviner.github.io/
>        IRC(freenode): stardiviner
>        GPG: F09F650D7D674819892591401B5DF1C95AE89AC3
>
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--
Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu

From mboxrd@z Thu Jan  1 00:00:00 1970
From: stardiviner <numbchild@gmail.com>
Subject: Re: How to use xml src block as data input?
Date: Mon, 30 Apr 2018 11:42:52 +0800
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Thanks, I forgot to mention I know example block can be used as input.
But this will lose the syntax highlighting. If there is no better solution.
I guess it is the best for now.

- --
[ stardiviner ] don't need to convince with trends.
       Blog: https://stardiviner.github.io/
       IRC(freenode): stardiviner
       GPG: F09F650D7D674819892591401B5DF1C95AE89AC3
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From mboxrd@z Thu Jan  1 00:00:00 1970
From: =?UTF-8?Q?Simonyi_Andr=C3=A1s?= <andras.simonyi@gmail.com>
Subject: Re: How to use xml src block as data input?
Date: Mon, 30 Apr 2018 09:47:32 +0000
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Hello,

if having the data in a source block is a must, then, as a last resort,
  you might try to pull the block's content from the buffer's parse tree:

#+begin_src emacs-lisp :var src-block-name="xml-sample"
   (let ((xml-str
      (org-element-map (org-element-parse-buffer) 'src-block
        (lambda (x)
          (and (string= src-block-name (org-element-property :name x))
           (org-element-property :value x)))
        nil t)))
     (with-temp-buffer (insert xml-str) (libxml-parse-xml-region (point-min)
(point-max))))
#+end_src
On Mon, 30 Apr 2018 at 05:43, stardiviner <numbchild@gmail.com> wrote:

> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA256


> Thanks, I forgot to mention I know example block can be used as input.
> But this will lose the syntax highlighting. If there is no better
solution.
> I guess it is the best for now.

> - --
> [ stardiviner ] don't need to convince with trends.
>         Blog: https://stardiviner.github.io/
>         IRC(freenode): stardiviner
>         GPG: F09F650D7D674819892591401B5DF1C95AE89AC3
> -----BEGIN PGP SIGNATURE-----

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> -----END PGP SIGNATURE-----

From mboxrd@z Thu Jan  1 00:00:00 1970
From: John Kitchin <jkitchin@andrew.cmu.edu>
Subject: Re: How to use xml src block as data input?
Date: Mon, 30 Apr 2018 06:34:27 -0700
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Here is a minor variation on this idea:

#+name: xml-example
#+BEGIN_SRC xml
<note>
<to>Tove</to>
<from>Jani</from>
<heading>Reminder</heading>
<body>Don't forget me this weekend!</body>
</note>
#+END_SRC

#+BEGIN_SRC emacs-lisp :var name="xml-example"
(save-excursion
  (org-babel-goto-named-src-block name)
  (let ((data (org-element-property :value (org-element-context))))
    (with-temp-buffer (insert data) (libxml-parse-xml-region (point-min) (point-max)))))
#+END_SRC

#+RESULTS:
| note | nil | (to nil Tove) | (from nil Jani) | (heading nil Reminder)
| (body nil Don't forget me this weekend!) |


Simonyi András writes:

> Hello,
>
> if having the data in a source block is a must, then, as a last resort,
>   you might try to pull the block's content from the buffer's parse tree:
>
> #+begin_src emacs-lisp :var src-block-name="xml-sample"
>    (let ((xml-str
>       (org-element-map (org-element-parse-buffer) 'src-block
>         (lambda (x)
>           (and (string= src-block-name (org-element-property :name x))
>            (org-element-property :value x)))
>         nil t)))
>      (with-temp-buffer (insert xml-str) (libxml-parse-xml-region (point-min)
> (point-max))))
> #+end_src
> On Mon, 30 Apr 2018 at 05:43, stardiviner <numbchild@gmail.com> wrote:
>
>> -----BEGIN PGP SIGNED MESSAGE-----
>> Hash: SHA256
>
>
>> Thanks, I forgot to mention I know example block can be used as input.
>> But this will lose the syntax highlighting. If there is no better
> solution.
>> I guess it is the best for now.
>
>> - --
>> [ stardiviner ] don't need to convince with trends.
>>         Blog: https://stardiviner.github.io/
>>         IRC(freenode): stardiviner
>>         GPG: F09F650D7D674819892591401B5DF1C95AE89AC3
>> -----BEGIN PGP SIGNATURE-----
>
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>> xmI9WZEFOB5A8auvw9csQTUUny2Mjw==
>> =qQac
>> -----END PGP SIGNATURE-----


--
Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu

From mboxrd@z Thu Jan  1 00:00:00 1970
From: stardiviner <numbchild@gmail.com>
Subject: Re: [SOLVED] How to use xml src block as data input?
Date: Tue, 01 May 2018 11:36:21 +0800
Message-ID: <87muxk3v4a.fsf@gmail.com>
References: <87efk214uq.fsf@gmail.com> <87d0yidpoa.fsf@gmail.com>
	<m2wowpj4ya.fsf@andrew.cmu.edu> <87a7tl8imb.fsf@gmail.com>
	<CAOWRwxDw8m3tf4y_HB1brDXyoJ1Qtce=o2vBKO9=ouePaaQ+OQ@mail.gmail.com>
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=2D----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Thanks, John and Simonyi. This is a solution on Elisp. Not general way.
But as a intermedia step, really workable. I chose this method.

BTW, is it possible to archived with noweb reference <<xml-data>> ?
Like

#+begin_src python :var data=3D<<xml-data>>
...
#+end_src

=2D --=20
[ stardiviner ] don't need to convince with trends.
       Blog: https://stardiviner.github.io/
       IRC(freenode): stardiviner
       GPG: F09F650D7D674819892591401B5DF1C95AE89AC3
=20=20=20=20=20=20
=2D----BEGIN PGP SIGNATURE-----

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MWxzlZ/gSNcsROF7DHVaZgCMMiiXuw=3D=3D
=3DfImh
=2D----END PGP SIGNATURE-----

From mboxrd@z Thu Jan  1 00:00:00 1970
From: John Kitchin <jkitchin@andrew.cmu.edu>
Subject: Re: [SOLVED] How to use xml src block as data input?
Date: Mon, 30 Apr 2018 21:14:44 -0700
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--000000000000d8e040056b1d352c
Content-Type: text/plain; charset="UTF-8"

all things in emacs are elisp...

You can use this function:

#+BEGIN_SRC emacs-lisp
(defun get-xml (name)
  (save-excursion
    (org-babel-goto-named-src-block name)
    (org-element-property :value (org-element-context))))
#+END_SRC

#+RESULTS:
: get-xml

like this in a python (or other general lang) block to get the xml as a
string that you parse in the language:

#+BEGIN_SRC python :var data=(get-xml "xml-example")
import xml.etree.ElementTree as ET
root = ET.fromstring(data)
for child in root:
    print(child.tag, child.attrib)
#+END_SRC

#+RESULTS:
: to {}
: from {}
: heading {}
: body {}

I don't know about noweb.

John

-----------------------------------
Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu


On Mon, Apr 30, 2018 at 8:36 PM, stardiviner <numbchild@gmail.com> wrote:

> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA256
>
> Thanks, John and Simonyi. This is a solution on Elisp. Not general way.
> But as a intermedia step, really workable. I chose this method.
>
> BTW, is it possible to archived with noweb reference <<xml-data>> ?
> Like
>
> #+begin_src python :var data=<<xml-data>>
> ...
> #+end_src
>
> - --
> [ stardiviner ] don't need to convince with trends.
>        Blog: https://stardiviner.github.io/
>        IRC(freenode): stardiviner
>        GPG: F09F650D7D674819892591401B5DF1C95AE89AC3
>
> -----BEGIN PGP SIGNATURE-----
>
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> MWxzlZ/gSNcsROF7DHVaZgCMMiiXuw==
> =fImh
> -----END PGP SIGNATURE-----
>

--000000000000d8e040056b1d352c
Content-Type: text/html; charset="UTF-8"
Content-Transfer-Encoding: quoted-printable

<div dir=3D"ltr">all things in emacs are elisp...<div><br></div><div>You ca=
n use this function:<br><div><br></div><div><div>#+BEGIN_SRC emacs-lisp</di=
v><div>(defun get-xml (name)</div><div>=C2=A0 (save-excursion</div><div>=C2=
=A0 =C2=A0 (org-babel-goto-named-src-block name)</div><div>=C2=A0 =C2=A0 (o=
rg-element-property :value (org-element-context))))</div><div>#+END_SRC</di=
v><div><br></div><div>#+RESULTS:</div><div>: get-xml</div><div><br></div><d=
iv>like this in a python (or other general lang) block to get the xml as a =
string that you parse in the language:</div><div><br></div><div>#+BEGIN_SRC=
 python :var data=3D(get-xml &quot;xml-example&quot;)</div><div>import xml.=
etree.ElementTree as ET</div><div>root =3D ET.fromstring(data)</div><div>fo=
r child in root:</div><div>=C2=A0 =C2=A0 print(child.tag, child.attrib)</di=
v><div>#+END_SRC</div><div><br></div><div>#+RESULTS:</div><div>: to {}</div=
><div>: from {}</div><div>: heading {}</div><div>: body {}</div></div></div=
><div><br></div><div>I don&#39;t know about noweb.</div></div><div class=3D=
"gmail_extra"><br clear=3D"all"><div><div class=3D"gmail_signature" data-sm=
artmail=3D"gmail_signature"><div dir=3D"ltr"><div><div dir=3D"ltr">John<br>=
<br>-----------------------------------<br>Professor John Kitchin=C2=A0<br>=
Doherty Hall A207F<br>Department of Chemical Engineering<br>Carnegie Mellon=
 University<br>Pittsburgh, PA 15213<br>412-268-7803</div><div dir=3D"ltr">@=
johnkitchin<br><a href=3D"http://kitchingroup.cheme.cmu.edu" target=3D"_bla=
nk">http://kitchingroup.cheme.cmu.edu</a><br><br></div></div></div></div></=
div>
<br><div class=3D"gmail_quote">On Mon, Apr 30, 2018 at 8:36 PM, stardiviner=
 <span dir=3D"ltr">&lt;<a href=3D"mailto:numbchild@gmail.com" target=3D"_bl=
ank">numbchild@gmail.com</a>&gt;</span> wrote:<br><blockquote class=3D"gmai=
l_quote" style=3D"margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left=
:1ex"><span class=3D"">-----BEGIN PGP SIGNED MESSAGE-----<br>
Hash: SHA256<br>
<br>
</span>Thanks, John and Simonyi. This is a solution on Elisp. Not general w=
ay.<br>
But as a intermedia step, really workable. I chose this method.<br>
<br>
BTW, is it possible to archived with noweb reference &lt;&lt;xml-data&gt;&g=
t; ?<br>
Like<br>
<br>
#+begin_src python :var data=3D&lt;&lt;xml-data&gt;&gt;<br>
...<br>
#+end_src<br>
<span class=3D""><br>
- -- <br>
[ stardiviner ] don&#39;t need to convince with trends.<br>
=C2=A0 =C2=A0 =C2=A0 =C2=A0Blog: <a href=3D"https://stardiviner.github.io/"=
 rel=3D"noreferrer" target=3D"_blank">https://stardiviner.github.io/</a><br=
>
=C2=A0 =C2=A0 =C2=A0 =C2=A0IRC(freenode): stardiviner<br>
=C2=A0 =C2=A0 =C2=A0 =C2=A0GPG: F09F650D7D674819892591401B5DF1<wbr>C95AE89A=
C3<br>
<br>
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=3DfImh<br>
-----END PGP SIGNATURE-----<br>
</blockquote></div><br></div>

--000000000000d8e040056b1d352c--

From mboxrd@z Thu Jan  1 00:00:00 1970
From: stardiviner <numbchild@gmail.com>
Subject: Re: [SOLVED] How to use xml src block as data input?
Date: Tue, 01 May 2018 21:10:16 +0800
Message-ID: <87vac7y11j.fsf@gmail.com>
References: <87efk214uq.fsf@gmail.com> <87d0yidpoa.fsf@gmail.com>
	<m2wowpj4ya.fsf@andrew.cmu.edu> <87a7tl8imb.fsf@gmail.com>
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This is great. Thanks John.

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[ stardiviner ] don't need to convince with trends.
       Blog: https://stardiviner.github.io/
       IRC(freenode): stardiviner
       GPG: F09F650D7D674819892591401B5DF1C95AE89AC3
=20=20=20=20=20=20
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