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Thu, 31 Oct 2024 16:24:47 -0700 (PDT) From: Richard Kim To: emacs-orgmode@gnu.org Subject: [BUG] ob-julia.el fails to handle matrices [9.7 (9.7-??-57b94f344 @ /home/kimr/r/e-my/sm-ms/.local/straight/build-30.0-10212049/org/)] Date: Thu, 31 Oct 2024 16:24:38 -0700 Message-ID: <87bjyzrh3d.fsf@gmail.com> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Received-SPF: pass client-ip=2607:f8b0:4864:20::431; envelope-from=emacs18@gmail.com; helo=mail-pf1-x431.google.com X-Spam_score_int: -15 X-Spam_score: -1.6 X-Spam_bar: - X-Spam_report: (-1.6 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_ENVFROM_END_DIGIT=0.25, FREEMAIL_FROM=0.001, FREEMAIL_REPLYTO_END_DIGIT=0.25, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=no autolearn_force=no X-Spam_action: no action X-BeenThere: emacs-orgmode@gnu.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: emacs18@gmail.com Errors-To: emacs-orgmode-bounces+larch=yhetil.org@gnu.org Sender: emacs-orgmode-bounces+larch=yhetil.org@gnu.org X-Migadu-Country: US X-Migadu-Flow: FLOW_IN X-Migadu-Scanner: mx11.migadu.com X-Migadu-Spam-Score: -1.49 X-Spam-Score: -1.49 X-Migadu-Queue-Id: 8637B86C07 X-TUID: FJCJN6pmVnKU I use the git version of org as of Oct 21, 2024. Following is a simple code block which evaluates to a row vector, i.e., a matrix with one row and three columns. #+PROPERTY: header-args:julia :session *Julia* #+BEGIN_SRC julia x=3D[1 2 3] #+END_SRC If this is evaluated via C-c C-c, then the result is the following error #+RESULTS: : "Source block evaluation failed. ArgumentError(""adding AbstractArray= other than AbstractVector as a column of a data frame is not allowed"")" If [1,2,3] column vector was used instead, then I don't run into this probl= em. I tracked this problem down to a line of julia code within org-babel-julia-write-object-command variable, i.e., the DataFrame() call shown below: local p_ans =3D %s local p_tmp_file =3D \"%s\" try using CSV, DataFrames if typeof(p_ans) <: DataFrame p_ans_df =3D p_ans else p_ans_df =3D DataFrame(:ans =3D> p_ans) end ... Following is the function call sequence which ends up using org-babel-julia-write-object-command variable above: org-ctrl-c-ctrl-c org-babel-execute-src-block org-babel-execute:julia org-babel-julia-evaluate org-babel-julia-evaluate-session Following interaction with julia interpreter illustrates the problem. If a column vector is specified as the value, then all is well. julia> x =3D DataFrame(:ans =3D> [1,2,3]) 3=C3=971 DataFrame Row =E2=94=82 ans =E2=94=82 Int64 =E2=94=80=E2=94=80=E2=94=80=E2=94=80=E2=94=80=E2=94=BC=E2=94=80=E2=94= =80=E2=94=80=E2=94=80=E2=94=80=E2=94=80=E2=94=80 1 =E2=94=82 1 2 =E2=94=82 2 3 =E2=94=82 3 However, if a row vector (or any other matrix) is specified, then it result= s in the error. julia> x =3D DataFrame(:ans =3D> [1 2 3]) ERROR: ArgumentError: adding AbstractArray other than AbstractVector as= a column of a data frame is not allowed Stacktrace: [1] _preprocess_column(col::Matrix{Int64}, len::Int64, copycols::Bool) @ DataFrames ~/.julia/packages/DataFrames/kcA9R/src/dataframe/datafr= ame.jl:248 [2] DataFrame(columns::Vector{Any}, colindex::DataFrames.Index; copyco= ls::Bool) @ DataFrames ~/.julia/packages/DataFrames/kcA9R/src/dataframe/datafr= ame.jl:227 [3] DataFrame @ ~/.julia/packages/DataFrames/kcA9R/src/dataframe/dataframe.jl:193 = [inlined] [4] DataFrame(pairs::Pair{Symbol, Matrix{Int64}}; makeunique::Bool, co= pycols::Bool) @ DataFrames ~/.julia/packages/DataFrames/kcA9R/src/dataframe/datafr= ame.jl:261 [5] DataFrame(pairs::Pair{Symbol, Matrix{Int64}}) @ DataFrames ~/.julia/packages/DataFrames/kcA9R/src/dataframe/datafr= ame.jl:257 [6] top-level scope @ none:1 This is using julia 1.11.1 which is the latest released version as of now. Emacs : GNU Emacs 30.0.91 (build 1, x86_64-pc-linux-gnu, GTK+ Version 3.24= .41, cairo version 1.18.0) of 2024-10-21 Package: Org mode version 9.7 (9.7-??-57b94f344 @ /home/kimr/r/e-my/sm-ms/.= local/straight/build-30.0-10212049/org/) current state: =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D (setq org-use-tag-inheritance nil org-noter-get-selected-text-hook '(org-noter-djvu--get-selected-text org-n= oter-nov--get-selected-text org-noter-pdf--get-selected-text) org-yank-image-file-name-function 'org-yank-image-autogen-filename org-persist-before-write-hook '(org-element--cache-persist-before-write) org-project-capture-per-project-filepath "TODOs.org" org-noter-doc-split-fraction '(0.7 . 0.3) org-pandoc-epub-rights "Copyright 2024 Richard Kim " org-html-format-headline-function 'org-html-format-headline-default-functi= on org-reveal-start-hook '(org-decrypt-entry) org-html-format-drawer-function #[514 "\207" [] 3 ("/home/kimr/r/e-my/sm-m= s/.local/straight/build-30.0-10212049/org/ox-html.elc" . 24176)] org-noter--get-current-view-hook '(org-noter-djvu--get-current-view org-no= ter-nov--get-current-view org-noter-pdf--get-current-view) org-after-todo-state-change-hook '(#[nil ((if (equal org-state "DONE") (pr= ogn (my/org-roam-copy-todo-to-today)))) (eshell-prompt-function cpp-config-= file my-command-map t)]) org-default-notes-file "/home/kimr/org/kimr/org/capture.org" org-directory "/home/kimr/org" org-latex-format-inlinetask-function 'org-latex-format-inlinetask-default-= function org-M-RET-may-split-line nil org-agenda-include-diary t org-noter--pretty-print-location-for-title-hook '(org-noter-djvu--pretty-p= rint-location org-noter-nov--pretty-print-location org-noter-pdf--pretty-pr= int-location-for-title) org-latex-to-mathml-convert-command "java -jar %j -unicode -force -df %o %= I" org-agenda-custom-commands '(("x" agenda) ("y" agenda*) ("w" todo "WAITING= ") ("W" todo-tree "WAITING") ("u" tags "+boss-urgent") ("v" tags-todo "+bos= s-urgent") ("U" tags-tree "+boss-urgent") ("f" occur-tre= e "\\") ("h" . "HOME+Name tags searches") ("rl" tags "+client+sell= ") ("rb" tags "+client+buy") ("rc" tags "+client+active") ("z" "Real Estate Clients" ((tags "+pending")= (tags "+active+sell") (tags "+active+buy") (tags "+closed+2022") (tags "+c= losed+2021")))) org-structure-template-alist '(("n" . "notes") ("a" . "export ascii") ("c"= . "center") ("C" . "comment") ("e" . "example") ("E" . "export") ("h" . "e= xport html") ("l" . "export latex") ("q" . "quote") ("s" . "src") ("v" . "verse= ")) org-babel-tangle-lang-exts '(("python" . "py") ("perl" . "pl") ("latex" . = "tex") ("julia" . "jl") ("java" . "java") ("D" . "d") ("C++" . "cpp") ("ema= cs-lisp" . "el") ("elisp" . "el")) org-noter--get-highlight-location-hook '(org-noter-pdf--get-highlight) org-clock-idle-time 10 org-roam-db-node-include-function #[0 "\300\207" [t] 1] org-roam-log-setup-hook '(org-roam--register-completion-functions-h) org-speed-command-hook '(org-speed-command-activate org-babel-speed-comman= d-activate) org-persist-after-read-hook '(org-element--cache-persist-after-read) org-clock-auto-clockout-timer 300 org-export-with-sub-superscripts nil org-confirm-elisp-link-function 'yes-or-no-p org-id-locations-file "/home/kimr/r/e-my/sm-ms/.cache/.org-id-locations" org-roam-preview-function 'org-roam-preview-default-function org-log-done 'time org-latex-format-headline-function 'org-latex-format-headline-default-func= tion org-noter--convert-to-location-cons-hook '(org-noter-pdf--convert-to-locat= ion-cons) org-latex-format-drawer-function #[514 "\207" [] 3 ("/home/kimr/r/e-my/sm-= ms/.local/straight/build-30.0-10212049/org/ox-latex.elc" . 38006)] org-export-with-author nil org-export-async-init-file "/home/kimr/r/e-my/sm-ms/layers/+emacs/org/loca= l/org-async-init.el" org-mode-hook '(navi-make-org-mode-promotion-headings-list org-bullets-mod= e #[0 "\300\301\302\303\304$\207" [add-hook before-save-hook org-encrypt-en= tries nil t] 5] #[nil (nil (tempo-use-tag-list 'org-tempo-tags) "Function to b= e executed upon setting a buffer to `org-mode'." (local-set-key "d" 'org-de= crypt-entry) (local-set-key "e" 'org-encrypt-entry) (local-set-key "= h" 'my-org-show-current-heading-tidily) (local-set-key "i" 'my-worf-insert-= internal-link) (local-set-key "j" 'my-helm-org-in-buffer-headings) (lo= cal-set-key "kb" 'my-add-double-backslashes) (local-set-key "ke" 'my-delete= -blank-lines-from-email) (local-set-key "kl" 'my-python-shell-send-line) (local-= set-key "kq" 'my-quote-email) (local-set-key "lf" 'python-eldoc-at-point) (local-set-key "li" 'my-python-completion-at-point) (lo= cal-set-key "ll" 'my-python-shell-send-line) (local-set-key "lr" 'my-python= -shell-send-region) (local-set-key "q" 'my-add-org-code-highlight) (local-s= et-key "s" 'my-org-clone-prev-src-block) (local-set-key "t" 'org-time-stamp) (local-set-key "=1Bi" 'my-insert-grep-output-of-symbol)= (local-set-key "lt" 'my-copy-preceding-time-stamp) (local-set-key "\n" 'or= g-shifttab) (local-unset-key (kbd "C-'")) (local-set-key (kbd "C-c = C-'") 'org-cycle-agenda-files) (setq buffer-auto-save-file-name nil) (setq = word-wrap t)) (t)] #[0 "\301\211\207" [imenu-create-index-function org-imenu-= get-tree] 2] spacemacs/org-setup-evil-surround spacemacs/load-yasnippet toc= -org-enable org-superstar-mode #[0 "\300\301\302\303\304$\207" [add-hook change-major-mod= e-hook org-fold-show-all append local] 5] #[0 "\300\301\302\303\304$\207" [add-hook change-major-mod= e-hook org-babel-show-result-all append local] 5] org-babel-result-hide-spe= c org-babel-hide-all-hashes org-download-enable dotspacemacs//prettify-spacemacs-docs = spacemacs//evil-org-mode spacemacs//init-company-org-mode company-mode) org-hide-emphasis-markers t org-noter--doc-approx-location-hook '(org-noter-djvu--approx-location-cons= org-noter-nov--approx-location-cons org-noter-pdf--approx-location-cons) org-noter--pretty-print-highlight-location-hook '(org-noter-pdf--pretty-pr= int-highlight) org-id-prefix "ID_" org-use-speed-commands t org-noter-set-up-document-hook '(org-noter-djvu--setup-handler org-noter-n= ov--setup-handler org-noter-pdf--doc-view-setup-handler org-noter-pdf--pdf-= view-setup-handler) org-html-use-infojs nil org-capture-templates '(("c" "Contacts" entry (file "/home/kimr/org/kimr/o= rg/contacts.org") "* %(org-contacts-template-name)\n:PROPERTIES:\n:= EMAIL: %(org-contacts-template-email)\n:MANAGER:\n:END:") ("d" "Diary" entry (file+datetree "/home/kimr/org/= kimr/org/diary.org") "* %?\nEntered on %U\n %i\n %a") ("t" "Task" entry (file+headline "/home/kimr/org/k= imr/org/capture.org" "Tasks") "* %?\nEntered on %U\n %i\n %a") ("p" "Protocol" entry (file+headline "/home/kimr/o= rg/kimr/org/capture.org" "Inbox") "* %^{Title}\nSource: %u, %c\n #+BEGIN_QU= OTE\n%i\n#+END_QUOTE\n\n\n%?") ("L" "Protocol Link" entry (file+headline "/home/k= imr/org/kimr/org/capture.org" "Inbox") "* %? [[%:link][%:description]] \nCa= ptured On: %U")) org-refile-targets '((org-agenda-files :maxlevel . 2)) org-confirm-shell-link-function 'yes-or-no-p org-odt-format-headline-function 'org-odt-format-headline-default-function org-archive-hook '(org-attach-archive-delete-maybe) org-src-window-setup 'current-window org-export-with-broken-links t org-noter--show-arrow-hook '(org-noter-pdf--show-arrow) org-metaup-hook '(org-babel-load-in-session-maybe) org-ditaa-jar-path "~/Public/org-mode/contrib/scripts/ditaa.jar" org-occur-hook '(org-first-headline-recenter) org-edit-src-content-indentation 0 org-download-annotate-function 'org-download-annotate-default org-html-format-inlinetask-function 'org-html-format-inlinetask-default-fu= nction org-html-infojs-options '((path . "https://wwwin/~kimr/scripts/org-info.js= ") (view . "overview") (toc . t) (ftoc . "0") (tdepth . "3") (sdepth . "4")= (mouse . "#cccccc") (buttons . "0") (ltoc . "above") (up . :html-link-up) (home . :h= tml-link-home)) org-roam-node-annotation-function 'org-roam-node-read--annotation org-bullets-bullet-list '("=E2=97=89" "=E2=97=8E" "=E2=9A=AB" "=E2=97=8B" = "=E2=96=BA" "=E2=97=87") org-ascii-format-drawer-function #[771 "\207" [] 4 ("/home/kimr/r/e-my/sm-= ms/.local/straight/build-30.0-10212049/org/ox-ascii.elc" . 13341)] org-roam-directory "/home/kimr/org" org-link-from-user-regexp "\\\\|\\" org-roam-db-autosync-mode t org-roam-indirect-buffer-hook '(org-roam--register-completion-functions-h) org-fold-reveal-start-hook '(org-decrypt-entry) org-link-abbrev-alist '(("cpplang" . "https://en.cppreference.com/w/cpp/la= nguage/%s") ("cpp" . "https://en.cppreference.com/w/cpp/%s") ("wiki" . "htt= ps://en.wikipedia.org/wiki/%s") ("mls" . "https://www.rmlsweb.com/v2/engine/report= gen.asp?MLSID=3D%s&PropType=3D1") ("github" . "https://github.com/%s")) org-download-link-format-function 'org-download-link-format-function-defau= lt org-bibtex-headline-format-function 'org-bibtex-headline-format-default org-capture-prepare-finalize-hook '(org-roam-capture--install-finalize-h) org-link-parameters '(("treemacs" :store treemacs-store-org-link) ("org-ql= -search" :follow org-ql-view--link-follow :store org-ql-view--link-store) ("roam" :follow org-roam-link-follow-link) ("green" = :face (:foreground "green")) ("red" :face (:foreground "red")) ("orgit-rev" :store orgit-rev-store :follow orgit-re= v-open :export orgit-rev-export :complete orgit-rev-complete-link) ("orgit-log" :store orgit-log-store :follow orgit-lo= g-open :export orgit-log-export :complete orgit-log-complete-link) ("orgit" :store orgit-status-store :follow orgit-sta= tus-open :export orgit-status-export :complete orgit-status-complete-link) ("eww" :follow org-eww-open :store org-eww-store-lin= k) ("rmail" :follow org-rmail-open :store org-rmail-store-link) ("mhe" :follow org-mhe-open :store org-mhe-store-lin= k) ("irc" :follow org-irc-visit :store org-irc-store-link :export org-irc-e= xport) ("info" :follow org-info-open :export org-info-expor= t :store org-info-store-link :insert-description org-info-description-as-co= mmand) ("gnus" :follow org-gnus-open :store org-gnus-store-= link) ("docview" :follow org-docview-open :export org-docview-export :store= org-docview-store-link) ("bibtex" :follow org-bibtex-open :store org-bibtex-= store-link) ("bbdb" :follow org-bbdb-open :export org-bbdb-expor= t :complete org-bbdb-complete-link :store org-bbdb-store-link) ("w3m" :stor= e org-w3m-store-link) ("doi" :follow org-link-doi-open :export org-link-do= i-export) ("attachment" :follow org-attach-follow :complete org-attach-comp= lete-link) ("id" :follow org-roam-id-open :store org-id-store-l= ink-maybe) ("elfeed" :follow elfeed-link-open :store elfeed-link-store-link) ("orgit-topic" :store orgit-topic-store :follow orgi= t-topic-open :export orgit-topic-export :complete orgit-topic-complete-link= :insert-description orgit-topic-describe-link) ("file+sys") ("file+emacs") ("shell" :follow org-lin= k--open-shell) ("news" :follow #[514 "\301\300\302Q\"\207" ["news" = browse-url ":"] 6 ("/home/kimr/r/e-my/sm-ms/.local/straight/build-30.0-1021= 2049/org/ol.elc" . 54565)]) ("mailto" :follow #[514 "\301\300\302Q\"\207" ["mail= to" browse-url ":"] 6 ("/home/kimr/r/e-my/sm-ms/.local/straight/build-30.0-= 10212049/org/ol.elc" . 54565)]) ("https" :follow #[514 "\301\300\302Q\"\207" ["https= " browse-url ":"] 6 ("/home/kimr/r/e-my/sm-ms/.local/straight/build-30.0-10= 212049/org/ol.elc" . 54565)]) ("http" :follow #[514 "\301\300\302Q\"\207" ["http" = browse-url ":"] 6 ("/home/kimr/r/e-my/sm-ms/.local/straight/build-30.0-1021= 2049/org/ol.elc" . 54565)]) ("ftp" :follow #[514 "\301\300\302Q\"\207" ["ftp" br= owse-url ":"] 6 ("/home/kimr/r/e-my/sm-ms/.local/straight/build-30.0-102120= 49/org/ol.elc" . 54565)]) ("shortdoc" :follow org-link--open-shortdoc :store o= rg-link--store-shortdoc :complete org-link--complete-shortdoc) ("help" :follow org-link--open-help :store org-link-= -store-help) ("file" :complete org-link-complete-file) ("elisp" :follow org= -link--open-elisp)) org-roam-capture-templates '(("c" "capture" plain "%?" :if-new (file+head = "captures/${slug}.org" "#+title: ${title}\n") :immediate-finish t :unnarrow= ed t) ("a" "article" plain "%?" :if-new (file+head = "articles/${title}.org" "#+title: ${title}\n#+filetags: :article:\n") :imme= diate-finish t :unnarrowed t)) org-log-buffer-setup-hook '(org-roam-log--setup spacemacs//org-note-mode) org-roam-completion-everywhere t org-noter-create-skeleton-functions '(org-noter-djvu--create-skeleton org-= noter-nov--create-skeleton-epub org-noter-pdf--create-skeleton) org-noter-get-buffer-file-name-hook '(org-noter-nov--get-buffer-file-name = org-noter-pdf--get-buffer-file-name) org-download-file-format-function 'org-download-file-format-default org-cycle-tab-first-hook '(org-babel-hide-result-toggle-maybe org-babel-he= ader-arg-expand) org-roam-node-display-template #("${title:30}: ${file:30} ${tags:10}" 24 3= 4 (face org-tag)) org-crypt-key "431F5E8F3E28BF619A4C364D11B90C1EC29BE527" org-imenu-depth 8 org-link-translation-function 'toc-org-unhrefify org-todo-keywords '((sequence "TODO" "WAIT" "|" "DONE" "DELEGATED")) org-present-mode-quit-hook '(spacemacs//org-present-end) org-id-method 'ts org-noter--get-containing-element-hook '(org-noter--get-containing-heading= org-noter--get-containing-property-drawer) org-agenda-before-write-hook '(org-agenda-add-entry-text) org-metadown-hook '(org-babel-pop-to-session-maybe) org-agenda-restore-windows-after-quit t org-publish-timestamp-directory "/home/kimr/r/e-my/sm-ms/.cache/.org-times= tamps/" org-tab-first-hook '(org-babel-hide-result-toggle-maybe org-babel-header-a= rg-expand) org-sort-function 'string-collate-lessp org--warnings nil org-babel-shell-names '("sh" "bash" "csh" "ash" "dash" "ksh" "xonsh") org-export-use-babel nil org-startup-folded 'content org-babel-pre-tangle-hook '(save-buffer) org-publish-project-alist '(("synopsys" :base-directory "/SCRATCH/kimr/org= /snps/org/" :publishing-directory "~/public_html" :recursive t :exclude "\\= (201[12345]\\|archive\\)" :auto-sitepmap t :makeindex t :section-number= s t :publishing-function org-html-publish-to-html :table-of-contents t) ("ltgdev" :base-directory "/remote/ltg_proj01_= us01/user/kimr/ltgdev-doc/" :publishing-directory "~/public_html/docs" :rec= ursive t :auto-sitepmap t :makeindex t :section-numbers t :publishing-function org-h= tml-publish-to-html :table-of-contents t) ("kimr-snps" :base-directory "/remote/us01home= 30/kimr/org/kimr/org/" :publishing-directory "~/public_html/kimr-snps" :aut= o-sitepmap t :makeindex t :section-numbers t :publishing-function org-h= tml-publish-to-html :table-of-contents t) ("kimr-home" :base-directory "/home/kimr/org/"= :publishing-directory "~/public_html/kimr" :recursive t :auto-sitepmap t := makeindex t :section-numbers t :publishing-function org-html-publish-to-html= :table-of-contents t) ("dropbox" :base-directory "/home/kimr/org/dro= pbox/" :publishing-directory "~/public_html/dropbox" :recursive t :auto-sit= epmap t :makeindex t :section-numbers t :publishing-function org-html-publish-to-ht= ml :table-of-contents t) ) org-latex-prefer-user-labels t org-src-preserve-indentation t org-roam-capture-new-node-hook '(org-roam-capture--insert-captured-ref-h) org-ditaa-eps-jar-path "/home/kimr/r/e-my/sm-ms/.local/straight/build-30.0= -10212049/contrib/scripts/DitaaEps.jar" org-noter--get-precise-info-hook '(org-noter-djvu--get-precise-info org-no= ter-nov--get-precise-info org-noter-pdf--doc-view-get-precise-info org-note= r-pdf--pdf-view-get-precise-info) org-roam-db-gc-threshold 402653184 org-babel-after-execute-hook '(spacemacs/ob-fix-inline-images) org-export-with-title nil org-export-before-parsing-hook '(org-re-reveal-prepare-tts org-attach-expa= nd-links) org-image-actual-width nil org-link-shell-confirm-function 'yes-or-no-p org-fold-core-isearch-open-function 'org-fold-core--isearch-reveal org-roam-capture-preface-hook '(org-roam-capture--try-capture-to-ref-h) org-tags-exclude-from-inheritance '("crypt") outline-isearch-open-invisible-function 'outline-isearch-open-invisible org-noter--doc-goto-location-hook '(org-noter-djvu--goto-location org-note= r-nov--goto-location org-noter-pdf--goto-location) org-src-mode-hook '(org-src-babel-configure-edit-buffer org-src-mode-confi= gure-edit-buffer) org-roam-find-file-hook '(org-roam-buffer--setup-redisplay-h org-roam--reg= ister-completion-functions-h org-roam--replace-roam-links-on-save-h org-roa= m-db-autosync--setup-update-on-save-h) org-latex-to-mathml-jar-file "~/public_html/mathtoweb.jar" org-protocol-protocol-alist '(("org-roam-node" :protocol "roam-node" :func= tion org-roam-protocol-open-node) ("org-roam-ref" :protocol "roam-ref" :fun= ction org-roam-protocol-open-ref)) org-babel-load-languages '((C . t) (ditaa . t) (dot . t) (emacs-lisp . t) = (gnuplot . t) (java . t) (js . t) (julia . t) (latex . t) (octave . t) (org= . t) (perl . t) (python . t) (R . t) (plantuml . t) (shell . t) (sqlite . t)) org-startup-with-inline-images t outline-minor-mode-hook '(outshine--outline-minor-mode-hook outshine-mode) org-modules '(org-habit ol-doi ol-w3m ol-bbdb ol-bibtex ol-docview ol-gnus= ol-info ol-irc ol-mhe ol-rmail ol-eww) org-roam-ref-annotation-function 'org-roam-ref-read--annotation org-agenda-loop-over-headlines-in-active-region nil org-present-mode-hook '(spacemacs//org-present-start) org-agenda-files "/home/kimr/org/kimr/dot-emacs/data/org-agenda-for-home" org-capture-mode-hook '(spacemacs//org-capture-start) org-attach-store-link-p t org-noter-create-session-from-document-hook '(org-noter--create-session-fr= om-document-file-default) org-link-elisp-confirm-function 'yes-or-no-p org-download-abbreviate-filename-function 'file-relative-name org-outline-path-complete-in-steps nil org-noter--add-highlight-hook '(org-noter-pdf--highlight-location) org-odt-format-inlinetask-function 'org-odt-format-inlinetask-default-func= tion org-src-lang-modes '(("python" . python) ("C" . c) ("C++" . c++) ("asympto= te" . asy) ("beamer" . latex) ("calc" . fundamental) ("cpp" . c++) ("ditaa"= . artist) ("desktop" . conf-desktop) ("dot" . fundamental) ("elisp" . emacs-lisp) ("ocaml"= . tuareg) ("screen" . shell-script) ("sqlite" . sql) ("toml" . conf-toml) = ("shell" . sh) ("ash" . sh) ("sh" . sh) ("bash" . sh) ("jsh" . sh) ("bash2" . sh)= ("dash" . sh) ("dtksh" . sh) ("ksh" . sh) ("es" . sh) ("rc" . sh) ("itcsh"= . sh) ("tcsh" . sh) ("jcsh" . sh) ("csh" . sh) ("ksh88" . sh) ("oash" . sh) ("pdksh" . = sh) ("mksh" . sh) ("posix" . sh) ("wksh" . sh) ("wsh" . sh) ("zsh" . sh) ("= rpm" . sh)) org-clock-persist-file "/home/kimr/r/e-my/sm-ms/.cache/org-clock-save.el" org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-show-empty-lin= es org-cycle-optimize-window-after-visibility-change org-cycle-display-inli= ne-images) org-persist-before-read-hook '(org-element--cache-persist-before-read) org-noter--pretty-print-location-hook '(org-noter-djvu--pretty-print-locat= ion org-noter-nov--pretty-print-location org-noter-pdf--pretty-print-locati= on) org-ascii-format-inlinetask-function 'org-ascii-format-inlinetask-default org-odt-format-drawer-function #[514 "\207" [] 3 ("/home/kimr/r/e-my/sm-ms= /.local/straight/build-30.0-10212049/org/ox-odt.elc" . 18490)] org-project-capture-projects-file "TODOs.org" org-id-link-to-org-use-id t )