From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp2 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id 0NtXOL+Gz165XAAA0tVLHw (envelope-from ) for ; Thu, 28 May 2020 09:39:11 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp2 with LMTPS id QKg9NL+Gz15/OwAAB5/wlQ (envelope-from ) for ; Thu, 28 May 2020 09:39:11 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 2CEE8940C04 for ; Thu, 28 May 2020 09:39:11 +0000 (UTC) Received: from localhost ([::1]:58700 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1jeF0G-0004yE-Q3 for larch@yhetil.org; Thu, 28 May 2020 05:39:08 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:37062) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1jeEzc-0004xO-GV for emacs-orgmode@gnu.org; Thu, 28 May 2020 05:38:28 -0400 Received: from mail-ej1-x62d.google.com ([2a00:1450:4864:20::62d]:46862) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1jeEzX-0005Wz-8J for emacs-orgmode@gnu.org; Thu, 28 May 2020 05:38:27 -0400 Received: by mail-ej1-x62d.google.com with SMTP id e2so31299454eje.13 for ; Thu, 28 May 2020 02:38:22 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:subject:date:message-id:mime-version; bh=CM+4SLEz1ihhX/A0FgThg/D94DBzsXPZxHlqMEOia98=; b=DcS9NqbupOj5dmF6f5ghIxF+nHrFTVpwkonV1eH/HQDn66nYPO+ROb2C8P08i6kFK1 LCO2NXegiD6r0UHi7af7tak/zt/TbQPSbc4VdMlR/EC20b15dNvcJ1ET9kOq4uiIPBXa vvRrregdJ3TewmnVDCGWE1GQuvMlnx6j0cfQ8kulvNQ90fQgtQf0Ve5XobtKdI/jNieV YBWOIqAb6AHAkwrUKWf3FrjignJb01TATJmKEtjPN8PK+/Y44hg7Q2kYjueENuEwTNJm HXhCImRh8UKAQXmgOXHtv+soiCjUotoSOTzKpJZq47pbkOaQeNRaxJe5PX5qQsvzOoyF 2FyA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:subject:date:message-id:mime-version; bh=CM+4SLEz1ihhX/A0FgThg/D94DBzsXPZxHlqMEOia98=; b=h66IDWErKJnIASZVDQR6TlFn0r9+l+d4CEcbsH4xT3P74cJrp3g1PSEmceYWvZSEMQ r65h7gZfXbIwE91Lw8U1n//d0r72HuUk+8/Qex1biRurK0jOH+ttDxncEMy2fLqNSgcq 5i6pGVZFEuMZGm7HOrGqrogV1YyUtBdgvUQFT7LqCLWmBedP6+XLIDwRrf29wWhKb4ec XfSyQAPZbOwfhtjuuQ2B2qxM58BPsbmoiiKgZmjEwTS1HGKOD+bnB0+DnuIhJAeXriPs ABecAO4w4uuuZL+Vf8cDfrMaJfOYjSb5y39uK9VVFsgRlSt9olZe8/lIthN79hrzDfH9 xJ0g== X-Gm-Message-State: AOAM533bBC1MioaPdy6iEZIhR/LpdK0IhTwC5fWk2XTH0A1+0nET3O+L nf5JrrM3z3x31hIt3V2JsjB2TC88R6U= X-Google-Smtp-Source: ABdhPJyXLZA7iqkLVlYbxdpzRJihBy/97J0oNRa0iIY7fYULYklOqP+6fidAbgQGQT2zuGxcIyRo/w== X-Received: by 2002:a17:906:7083:: with SMTP id b3mr2067560ejk.57.1590658700223; Thu, 28 May 2020 02:38:20 -0700 (PDT) Received: from delllaptop.lockywolf.net ([95.85.18.95]) by smtp.gmail.com with ESMTPSA id n15sm4822156ejs.10.2020.05.28.02.38.18 for (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Thu, 28 May 2020 02:38:19 -0700 (PDT) From: Vladimir Nikishkin To: emacs-orgmode@gnu.org Subject: Bug: org export rewrites the org buffer. if Emacs crashes during the export, the file gets corrupted [9.3.4 (9.3.4-5-ga0f3bb-elpa @ /home/lockywolf/.emacs.d/elpa/org-20200210/)] Date: Thu, 28 May 2020 17:38:06 +0800 Message-ID: <87a71s2ydd.fsf@delllaptop.lockywolf.net> MIME-Version: 1.0 Content-Type: text/plain Received-SPF: pass client-ip=2a00:1450:4864:20::62d; envelope-from=lockywolf@gmail.com; helo=mail-ej1-x62d.google.com X-detected-operating-system: by eggs.gnu.org: No matching host in p0f cache. That's all we know. X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, IP_LINK_PLUS=0.012, RCVD_IN_DNSWL_NONE=-0.0001, SPF_PASS=-0.001, URIBL_BLOCKED=0.001 autolearn=_AUTOLEARN X-Spam_action: no action X-BeenThere: emacs-orgmode@gnu.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+larch=yhetil.org@gnu.org Sender: "Emacs-orgmode" X-Scanner: scn0 Authentication-Results: aspmx1.migadu.com; dkim=pass header.d=gmail.com header.s=20161025 header.b=DcS9Nqbu; dmarc=pass (policy=none) header.from=gmail.com; spf=pass (aspmx1.migadu.com: domain of emacs-orgmode-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=emacs-orgmode-bounces@gnu.org X-Spam-Score: -1.71 X-TUID: 7NtAYYE9Xuuw Remember to cover the basics, that is, what you expected to happen and what in fact did happen. You don't know how to make a good report? See https://orgmode.org/manual/Feedback.html#Feedback Your bug report will be posted to the Org mailing list. ------------------------------------------------------------------------ I have a very long org file, more than 70000 lines. Exporting it is a naturally long process. Additionally, some blocks are malformed, so the export process fails. to debug them, I use toggle-debug-on-error When I was debugging export today, I found that while exporting, org destructively strips the header arguments from the blocks, such as :exports, :results, :file. It should be normally putting them back, I guess, but if toggle-debug-on-error is on, and there are places where (debug) is invoked or if emacs crashes (or is killed) during the export process, the headers never go back. Test file: https://gitlab.com/Lockywolf/chibi-sicp/-/blob/master/index.org Emacs : GNU Emacs 26.3 (build 1, x86_64-slackware-linux-gnu, GTK+ Version 3.24.12) of 2019-11-26 Package: Org mode version 9.3.4 (9.3.4-5-ga0f3bb-elpa @ /home/lockywolf/.emacs.d/elpa/org-20200210/) current state: ============== (setq org-src-mode-hook '((lambda nil (modify-syntax-entry 60 ".") (modify-syntax-entry 62 ".") (setq geiser-autodoc--inhibit t)) org-src-babel-configure-edit-buffer org-src-mode-configure-edit-buffer) org-latex-listings t org-link-shell-confirm-function 'yes-or-no-p org-babel-after-execute-hook '((lambda nil (if org-inline-image-overlays (progn (org-redisplay-inline-images))) ) ) org-metadown-hook '(org-babel-pop-to-session-maybe) org-export-with-sub-superscripts '{} org-clock-out-hook '(org-clock-remove-empty-clock-drawer) org-html-format-inlinetask-function 'org-html-format-inlinetask-default-function org-pretty-entities t org-odt-format-headline-function 'org-odt-format-headline-default-function org-link-descriptive nil org-latex-pdf-process '("latexmk -lualatex -outdir=%o -f %f") org-agenda-files '("~/Personal_Planner/Planner.org" "~/Personal_Planner/lockywolf_net.org" "~/Personal_Planner/cyberpunk_smarthome.org" "~/Personal_Planner/notes.org" "~/Personal_Planner/2020-04-28-hotkeys-to-remember.txt.org" "~/DevLinux/chibi-sicp/index.org") org-ascii-format-inlinetask-function 'org-ascii-format-inlinetask-default org-modules '(org-habit ol-w3m ol-bbdb ol-bibtex ol-docview ol-gnus ol-info ol-irc ol-mhe ol-rmail ol-eww) org-plantuml-jar-path "/usr/local/bin/plantuml.jar" org-mode-hook '(#[0 "\301\211\207" [imenu-create-index-function org-imenu-get-tree] 2] turn-on-org-cdlatex org-tempo-setup (lambda nil (add-to-list (quote org-structure-template-alist) (quote ("p" . "src plantuml :noweb no :exports both :file "))) (add-to-list (quote org-structure-template-alist) (quote ("SO" . "src scheme :exports both :results output"))) (add-to-list (quote org-structure-template-alist) (quote ("SV" . "src scheme :exports both :results value"))) (add-to-list (quote org-structure-template-alist) (quote ("SE" . "src scheme :exports code"))) (add-to-list (quote org-structure-template-alist) (quote ("EL" . "src elisp :exports both :results output"))) (add-to-list (quote org-structure-template-alist) (quote ("F" . "src f90 :exports both :results output"))) ) (lambda nil (modify-syntax-entry 60 ".") (modify-syntax-entry 62 ".")) (lambda nil (imenu-add-to-menubar "Imenu")) #[0 "\300\301\302\303\304$\207" [add-hook change-major-mode-hook org-show-all append local] 5] #[0 "\300\301\302\303\304$\207" [add-hook change-major-mode-hook org-babel-show-result-all append local] 5] org-babel-result-hide-spec org-babel-hide-all-hashes org-eldoc-load) org-odt-format-drawer-function #[514 "\207" [] 3 "\n\n(fn NAME CONTENTS)"] org-archive-hook '(org-attach-archive-delete-maybe) org-confirm-elisp-link-function 'yes-or-no-p org-agenda-before-write-hook '(org-agenda-add-entry-text) org-preview-latex-default-process 'imagemagick org-metaup-hook '(org-babel-load-in-session-maybe) org-bibtex-headline-format-function #[257 "\300\236A\207" [:title] 3 "\n\n(fn ENTRY)"] org-latex-format-drawer-function #[514 "\207" [] 3 "\n\n(fn _ CONTENTS)"] org-babel-pre-tangle-hook '(save-buffer) org-latex-compiler "lualatex" org-tab-first-hook '(org-babel-hide-result-toggle-maybe org-babel-header-arg-expand) org-babel-load-languages '((plantuml . t) (C . t) (scheme . t) (latex . t) (shell . t) (fortran . t)) org-log-done 'time org-link-abbrev-alist '(("bugzilla" . "http://10.1.2.9/bugzilla/show_bug.cgi?id=") ("url-to-ja" . "http://translate.google.fr/translate?sl=en&tl=ja&u=%h") ("google" . "http://www.google.com/search?q=") ("gmap" . "http://maps.google.com/maps?q=%s") ("omap" . "http://nominatim.openstreetmap.org/search?q=%s&polygon=1") ("ads" . "https://ui.adsabs.harvard.edu/search/q=%20author%3A\"%s\"") ("note" . "rtcite:~/GDrive_vladimir_nikishkin_AT_phystech_edu/BibTeX_Bibliography/bibliography-bib.org::#%s") ("bib" . "rtcite:~/GDrive_vladimir_nikishkin_AT_phystech_edu/BibTeX_Bibliography/bibliography-bib.bib::%s") ) org-startup-align-all-tables t org-ascii-format-drawer-function #[771 "\207" [] 4 "\n\n(fn NAME CONTENTS WIDTH)"] org-src-lang-modes '(("arduino" . arduino) ("redis" . redis) ("php" . php) ("C" . c) ("C++" . c++) ("asymptote" . asy) ("bash" . sh) ("beamer" . latex) ("calc" . fundamental) ("cpp" . c++) ("ditaa" . artist) ("dot" . fundamental) ("elisp" . emacs-lisp) ("ocaml" . tuareg) ("screen" . shell-script) ("shell" . sh) ("sqlite" . sql)) org-catch-invisible-edits 'show org-occur-hook '(org-first-headline-recenter) org-log-into-drawer t org-edit-src-auto-save-idle-delay 15 org-agenda-include-diary t org-structure-template-alist '(("F" . "src f90 :exports both :results output") ("EL" . "src elisp :exports both :results output") ("SE" . "src scheme :exports code") ("SV" . "src scheme :exports both :results value") ("SO" . "src scheme :exports both :results output") ("p" . "src plantuml :noweb no :exports both :file ") ("a" . "export ascii") ("c" . "center") ("C" . "comment") ("e" . "example") ("E" . "export") ("h" . "export html") ("l" . "export latex") ("q" . "quote") ("s" . "src") ("v" . "verse")) org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-show-empty-lines org-optimize-window-after-visibility-change) org-edit-src-turn-on-auto-save t org-speed-command-hook '(org-speed-command-activate org-babel-speed-command-activate) org-hierarchical-todo-statistics nil org-preview-latex-process-alist '((dvipng :programs ("latex" "dvipng") :description "dvi > png" :message "you need to install the programs: latex and dvipng." :image-input-type "dvi" :image-output-type "png" :image-size-adjust (1.0 . 1.0) :latex-compiler ("latex -interaction nonstopmode -output-directory %o %f") :image-converter ("dvipng -D %D -T tight -o %O %f")) (dvisvgm :programs ("latex" "dvisvgm") :description "dvi > svg" :message "you need to install the programs: latex and dvisvgm." :image-input-type "dvi" :image-output-type "svg" :image-size-adjust (1.7 . 1.5) :latex-compiler ("latex -interaction nonstopmode -output-directory %o %f") :image-converter ("dvisvgm %f -n -b min -c %S -o %O")) (imagemagick :programs ("latex" "convert") :description "pdf > png" :message "you need to install the programs: latex and imagemagick." :image-input-type "pdf" :image-output-type "png" :image-size-adjust (1.0 . 1.0) :latex-compiler ("lualatex -interaction nonstopmode -output-directory %o %f") :image-converter ("convert -density %D -trim -antialias %f -quality 100 %O") ) ) org-odt-format-inlinetask-function 'org-odt-format-inlinetask-default-function org-babel-tangle-lang-exts '(("fortran" . "F90") ("latex" . "tex") ("D" . "d") ("C++" . "cpp") ("emacs-lisp" . "el") ("elisp" . "el")) org-format-latex-options '(:foreground default :background default :scale 3.0 :html-foreground "Black" :html-background "Transparent" :html-scale 1.0 :matchers ("begin" "$1" "$" "$$" "\\(" "\\[")) org-latex-listings-langs '((patch "bash") (shell "bash") (plantuml "MetaPost") (elisp "elisp") (scheme "Lisp") (emacs-lisp "Lisp") (lisp "Lisp") (clojure "Lisp") (c "C") (cc "C++") (fortran "fortran") (perl "Perl") (cperl "Perl") (python "Python") (ruby "Ruby") (html "HTML") (xml "XML") (tex "TeX") (latex "[LaTeX]TeX") (shell-script "bash") (gnuplot "Gnuplot") (ocaml "Caml") (caml "Caml") (sql "SQL") (sqlite "sql") (makefile "make") (R "r")) org-confirm-shell-link-function 'yes-or-no-p org-link-parameters '(("attachment" :follow org-attach-open-link :export org-attach-export-link :complete org-attach-complete-link) ("id" :follow org-id-open) ("eww" :follow eww :store org-eww-store-link) ("rmail" :follow org-rmail-open :store org-rmail-store-link) ("mhe" :follow org-mhe-open :store org-mhe-store-link) ("irc" :follow org-irc-visit :store org-irc-store-link :export org-irc-export) ("info" :follow org-info-open :export org-info-export :store org-info-store-link) ("gnus" :follow org-gnus-open :store org-gnus-store-link) ("docview" :follow org-docview-open :export org-docview-export :store org-docview-store-link) ("bibtex" :follow org-bibtex-open :store org-bibtex-store-link) ("bbdb" :follow org-bbdb-open :export org-bbdb-export :complete org-bbdb-complete-link :store org-bbdb-store-link) ("w3m" :store org-w3m-store-link) ("rtcite" :follow org-bibtex-open :export my-rtcite-export-handler) ("file+sys") ("file+emacs") ("shell" :follow org-link--open-shell) (#1="news" :follow #[257 #2="\301\300\302Q!\207" [#1# browse-url #4=":"] 5 #5= "\n\n(fn URL)"] ) (#3="mailto" :follow #[257 #2# [#3# browse-url #4#] 5 #5#]) (#6="https" :follow #[257 #2# [#6# browse-url #4#] 5 #5#]) (#7="http" :follow #[257 #2# [#7# browse-url #4#] 5 #5#]) (#8="ftp" :follow #[257 #2# [#8# browse-url #4#] 5 #5#]) ("help" :follow org-link--open-help) ("file" :complete org-link-complete-file) ("elisp" :follow org-link--open-elisp) ("doi" :follow org-link--open-doi)) org-latex-format-headline-function 'org-latex-format-headline-default-function org-agenda-start-with-follow-mode t org-link-elisp-confirm-function 'yes-or-no-p org-org-src-mode-hook '((lambda nil (modify-syntax-entry 60 ".") (modify-syntax-entry 62 ".")) ) org-latex-format-inlinetask-function 'org-latex-format-inlinetask-default-function org-tab-before-tab-emulation-hook '(org-tempo-complete-tag) org-html-format-drawer-function #[514 "\207" [] 3 "\n\n(fn NAME CONTENTS)"] org-latex-packages-alist '((#1="" "color") (#1# "listings")) org-image-actual-width nil org-html-use-infojs t org-latex-classes '(("acmart" "\\documentclass[sigplan,anonymous,review,timestamp,natbib=false]{acmart}" ("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . "\\subsubsection*{%s}")) ("article" "\\documentclass[11pt]{article}" ("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . "\\subsubsection*{%s}") ("\\paragraph{%s}" . "\\paragraph*{%s}") ("\\subparagraph{%s}" . "\\subparagraph*{%s}")) ("report" "\\documentclass[11pt]{report}" ("\\part{%s}" . "\\part*{%s}") ("\\chapter{%s}" . "\\chapter*{%s}") ("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . "\\subsubsection*{%s}")) ("book" "\\documentclass[11pt]{book}" ("\\part{%s}" . "\\part*{%s}") ("\\chapter{%s}" . "\\chapter*{%s}") ("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . "\\subsubsection*{%s}")) ) org-html-format-headline-function 'org-html-format-headline-default-function org-confirm-babel-evaluate 'my-org-confirm-babel-evaluate org-use-sub-superscripts '{} org-latex-listings-options '(("numbers" "left") ("frame" "single")) org-use-speed-commands t org-latex-bib-compiler "biber" org-default-notes-file "~/Personal_Planner/notes.org" ) -- -- Vladimir Nikishkin (MiEr, lockywolf)