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| | #+PROPERTY: HEADER-ARGS+ :eval no-export :exports both
* Intro
An org document with code blocks to help test the proposed patchs.
See [[*On top of ob-shell][On top of ob-shell]] for asynchronous shell scripts using ob-shell.
See [[*On top of ob-python][On top of ob-python]] for asynchronous python scripts using ob-python.
You need to load:
#+begin_src elisp :results silent
(setq-local org-confirm-babel-evaluate nil)
(load-file "my-async-tests.el")
#+end_src
Emacs and org versions:
#+begin_src elisp
(mapcar (lambda (sb) (list sb (symbol-value sb)))
'(emacs-version org-version))
#+end_src
#+RESULTS:
| emacs-version | 30.0.50 |
| org-version | 9.7-pre |
Note that we've disabled eval on export: export doesn't know it needs
to wait for asynchronous results.
* POSIX shells
** A simple bash example
:PROPERTIES:
:header-args:bash: :execute-with my-shell-babel :nasync yes
:END:
The package `my-async-tests.el' contains the function
`my-shell-babel-schedule' to evaluate shell script asynchronously.
The header-args properties above request asynchronous execution for
bash (:nasync yes), and, tells ob-core to use the prefix
`my-shell-babel' when looking for functions to evaluate a source
block. Thus, org will delegate execution to `my-shell-babel-schedule'.
We don't have `my-shell-babel-execute', so, in this case, :nasync must
be yes.
Examples taken from the org mailing list and from worg.
A simple execution:
#+begin_src bash
date
#+end_src
#+RESULTS:
: Wed Feb 21 15:56:23 CET 2024
A tricky computation takes some time:
#+begin_src bash
sleep 1; date
#+end_src
#+RESULTS:
: Wed Feb 21 15:56:25 CET 2024
An example of a failure:
#+begin_src bash
sleepdd 1; false
#+end_src
#+RESULTS:
** On top of ob-shell
:PROPERTIES:
:header-args:bash: :execute-with my-org-babel :nasync yes
:header-args:bash+: :session sh-async
:END:
#+begin_src bash
sleep 1; date
#+end_src
#+RESULTS:
: Wed Feb 21 15:56:42 CET 2024
#+begin_src bash :results output :session *test* :nasync yes
cd /tmp
echo "hello world"
#+end_src
#+RESULTS:
: hello world
#+begin_src bash :results output
# comment
# comment
#+end_src
#+RESULTS:
#+begin_src bash :results output
# print message
echo \"hello world\"
#+end_src
#+RESULTS:
: "hello world"
#+begin_src bash :results output
echo "hello"
echo "world"
#+end_src
#+RESULTS:
: hello
: world
#+begin_src bash :results output
echo PID: "$$"
#+end_src
#+RESULTS:
: PID: 22212
#+begin_src bash :results output
echo PID: "$$"
#+end_src
#+RESULTS:
: PID: 22212
#+begin_src bash :results output :session shared
echo PID: "$$"
X=5
#+end_src
#+RESULTS:
: PID: 22218
#+begin_src bash :results output :session shared
echo PID: "$$"
echo X was set to "$X"
#+end_src
#+RESULTS:
: PID: 22218
: X was set to 5
#+begin_src bash :nasync yes :results value scalar
echo "Execute session blocks in the background"
sleep 3
echo "Using the :async header"
#+end_src
#+RESULTS:
: Execute session blocks in the background
: Using the :async header
: 0
#+name: their-os
Linux
#+begin_src bash :results output :shebang #!/usr/bin/env bash :stdin their-os :cmdline RMS :tangle ask_for_os.sh
# call as ./ask_for_os.sh NAME, where NAME is who to ask
if [ -z "$1" ]; then
asked="$USER"
else
asked="$1"
fi
echo Hi, "$asked"! What operating system are you using?
read my_os
if [ "$asked" = "RMS" ]; then
echo You\'re using GNU/"$my_os"!
elif [ "$asked" = "Linus" ]; then
echo You\'re using "$my_os"!
else
echo You\'re using `uname -o`!
fi
#+end_src
#+RESULTS:
: Hi, RMS! What operating system are you using?
: You're using GNU/Linux!
#+begin_src bash
declare -a array
m=4
n=3
for ((i=0; i<m; i++))
do
for ((j=0; j<n; j++))
do
a[${i},${j}]=$RANDOM
done
done
for ((i=0; i<m; i++))
do
for ((j=0; j<n; j++))
do
echo -ne "${a[${i},${j}]}\t"
done
echo
done
#+end_src
#+RESULTS:
| 7592 | 13920 | 4911 |
| 7592 | 13920 | 4911 |
| 7592 | 13920 | 4911 |
| 7592 | 13920 | 4911 |
#+begin_src bash :results list
declare -a array
m=4
n=3
for ((i=0; i<m; i++))
do
for ((j=0; j<n; j++))
do
a[${i},${j}]=$RANDOM
done
done
for ((i=0; i<m; i++))
do
for ((j=0; j<n; j++))
do
echo -ne "${a[${i},${j}]}\t"
done
echo
done
#+end_src
#+RESULTS:
- 17593
384
1439
- 17593
384
1439
- 17593
384
1439
- 17593
384
1439
#+begin_src bash :results file :file my_output.txt
declare -a array
m=4
n=3
for ((i=0; i<m; i++))
do
for ((j=0; j<n; j++))
do
a[${i},${j}]=$RANDOM
done
done
for ((i=0; i<m; i++))
do
for ((j=0; j<n; j++))
do
echo -ne "${a[${i},${j}]}\t"
done
echo
done
#+end_src
#+RESULTS:
[[file:my_output.txt]]
#+begin_src bash :results output
cat my_output.txt
#+end_src
#+RESULTS:
: 30132 16194 19934
: 30132 16194 19934
: 30132 16194 19934
: 30132 16194 19934
#+begin_src bash :results output :dir /ssh:phone: :session none
if [ ! -e "foo_file" ];
then
echo "foo" > foo_file
echo "Created foo_file"
else
echo "foo_file already exists!"
fi
#+end_src
#+RESULTS:
: foo_file already exists!
#+begin_src bash :results output :dir /ssh:phone: :session *remote*
if [ ! -e "foo_file" ];
then
echo "foo" > foo_file
echo "Created foo_file"
else
echo "foo_file already exists!"
fi
#+end_src
#+RESULTS:
: Created foo_file
#+RESULTS:
#+begin_src bash :results none :session *my-session*
X=1
#+end_src
#+RESULTS:
#+begin_src bash :results output :session *my-session*
echo X was set to "$X"
#+end_src
#+RESULTS:
: X was set to 1
#+begin_src bash :results output :session *another-session*
echo X was set to "$X"
#+end_src
#+RESULTS:
: X was set to
#+RESULTS:
#+begin_src bash :results output
echo "Hello, world!"
sleep 3
echo "Good-bye, cruel World..."
#+end_src
#+RESULTS:
: Hello, world!
: Good-bye, cruel World...
#+begin_src bash :var by_two=0 x=3 :session none
if [ "$by_two" = "0" ]; then
echo $(($x * 2))
else
echo $(($x * 3))
fi
#+end_src
#+RESULTS:
: 6
#+begin_src bash :results output :var arr='("apple" "banana" "cherry")
echo The first element is...
echo \"${arr[1]}\"
#+end_src
#+RESULTS:
: The first element is...
: "banana"
*** TODO Doesn't work yet: asynchronous that depends from other blocks
#+name: multiply_by_2
#+begin_src bash :var data="" :results output
echo $(($data * 2))
#+end_src
#+RESULTS: multiply_by_2
: bash: * 2: syntax error: operand expected (error token is "* 2")
#+begin_src bash :post multiply_by_2(data=*this*)
echo 3
#+end_src
#+results:
* On top of ob-python
:PROPERTIES:
:header-args:python: :execute-with my-org-babel :nasync yes
:header-args:python+: :session py-async
:END:
Used =header-args= properties:
- =:execute-with my-org-babel=: look for functions with the prefix `my-org-babel' to execute
blocks (for the asynchronous case use
`my-org-babel-schedule', and, for the synchronous case
`my-org-babel-execute'). These functions are defined in [[file:my-async-tests.el]].
- =:nasync yes=: by default, execute asynchronously (use `my-org-babel-schedule').
- =:session py-async= by default, use a session named "py-async".
** basic examples
*** async with a session
A very simple test:
#+begin_src python
2+3
#+end_src
#+RESULTS:
: 5
Let's import the module time in our session.
#+begin_src python :results silent
import time
#+end_src
#+RESULTS:
(Yes, =:results silent= needs some work.)
A table that requires some time to compute:
#+begin_src python
start = time.time()
time.sleep(1)
end = time.time()
["%.1fs" % t for t in [start, end, end-start]]
#+end_src
#+RESULTS:
| 1708515666.8s | 1708515667.8s | 1.0s |
An error (click on the error , <mouse-1>, to see the details):
#+begin_src python
2/0
#+end_src
#+RESULTS:
*** async with no session
:PROPERTIES:
:header-args:python+: :session none
:END:
A very simple test:
#+begin_src python
2+3
#+end_src
#+RESULTS:
: 5
Let's import the module time in our session.
#+begin_src python :results silent
import time
#+end_src
#+RESULTS:
(Yes, =:results silent= needs some work.)
A table that requires some time to compute:
#+begin_src python
start = time.time()
time.sleep(1)
end = time.time()
["%.1fs" % t for t in [start, end, end-start]]
#+end_src
#+RESULTS:
| 1708083470.9s | 1708083471.9s | 1.0s |
Yes, it failed, as expected. "import time" was done in its own
temporary session. The old result is preserved; the error is display
as an overlay. Click on it to get more info about the error.
Let's fix it, adding the import line:
#+begin_src python
import time
start = time.time()
time.sleep(1)
end = time.time()
["%.1fs" % t for t in [start, end, end-start]]
#+end_src
#+RESULTS:
| 1708515915.0s | 1708515916.0s | 1.0s |
An error (click on the error , <mouse-1>, to see the details):
#+begin_src python
2/0
#+end_src
#+RESULTS:
*** sync with a session
:PROPERTIES:
:header-args:python+: :session py-sync-session :nasync no
:END:
A very simple test:
#+begin_src python
2+3
#+end_src
#+RESULTS:
: 5
Let's import the module time in our session.
#+begin_src python :results silent
import time
#+end_src
(Yes, =:results silent= needs some work.)
A table that requires some time to compute:
#+begin_src python
start = time.time()
time.sleep(1)
end = time.time()
["%.1fs" % t for t in [start, end, end-start]]
#+end_src
#+RESULTS:
| 1708102997.5s | 1708102998.5s | 1.0s |
An error (click on the error , <mouse-1>, to see the details):
#+begin_src python
2/0
#+end_src
#+RESULTS:
*** sync with no session
:PROPERTIES:
:header-args:python+: :session none :nasync no
:END:
A very simple test:
#+begin_src python
2+3
#+end_src
#+RESULTS:
: 5
Let's import the module time in our session.
#+begin_src python :results silent
import time
#+end_src
(Yes, =:results silent= needs some work.)
A table that requires some time to compute:
#+begin_src python
start = time.time()
time.sleep(1)
end = time.time()
["%.1fs" % t for t in [start, end, end-start]]
#+end_src
#+RESULTS:
| 1708083470.9s | 1708083471.9s | 1.0s |
Yes, that fails (no session), displaying the details in a popup. Let's
fix it:
#+begin_src python
import time
start = time.time()
time.sleep(1)
end = time.time()
["%.1fs" % t for t in [start, end, end-start]]
#+end_src
#+RESULTS:
| 1708103039.0s | 1708103040.0s | 1.0s |
An error (click on the error , <mouse-1>, to see the details):
#+begin_src python
2/0
#+end_src
#+RESULTS:
** worg examples
Let's import matplotlib in our session.
#+begin_src python
import matplotlib
import matplotlib.pyplot as plt
#+end_src
#+RESULTS:
: None
A figure in a PDF, asynchronous case.
#+begin_src python :results file link
fig=plt.figure(figsize=(3,2))
plt.plot([1,3,2])
fig.tight_layout()
fname = 'myfig-async.pdf'
plt.savefig(fname)
fname # return this to org-mode
#+end_src
#+RESULTS:
[[file:myfig-async.pdf]]
A figure in a PDF, synchronous case.
#+begin_src python :results file link :nasync no
fig=plt.figure(figsize=(3,2))
plt.plot([1,3,2])
fig.tight_layout()
fname = 'myfig-sync.pdf'
plt.savefig(fname)
fname # return this to org-mode
#+end_src
#+RESULTS:
[[file:myfig-sync.pdf]]
A PNG figure, asynchronous case.
#+begin_src python :results graphics file output :file boxplot.png
fig=plt.figure(figsize=(3,2))
plt.plot([1,3,2])
fig.tight_layout()
fig
#+end_src
#+RESULTS:
[[file:boxplot.png]]
Same, but using the =:return= keyword.
#+begin_src python :return "plt.gcf()" :results graphics file output :file boxplot.png
fig=plt.figure(figsize=(3,2))
plt.plot([1,3,2])
fig.tight_layout()
#+end_src
#+RESULTS:
[[file:boxplot.png]]
Same, asynchronous but without a session this time.
#+begin_src python :return "plt.gcf()" :results graphics file output :file boxplot-no-sess-a-y.png :session none
import matplotlib
import matplotlib.pyplot as plt
fig=plt.figure(figsize=(3,2))
plt.plot([1,3,2])
fig.tight_layout()
#+end_src
#+RESULTS:
[[file:boxplot-no-sess-a-y.png]]
Lists are table,
#+begin_src python
[1,2,3]
#+end_src
#+RESULTS:
| 1 | 2 | 3 |
unless requested otherwise.
#+begin_src python :results verbatim
[1,2,3]
#+end_src
#+RESULTS:
: [1, 2, 3]
Dictionaries are tables too.
#+begin_src python :results table
{"a": 1, "b": 2}
#+end_src
#+RESULTS:
| a | 1 |
| b | 2 |
Let's try the example with Panda.
#+begin_src python :results none
import pandas as pd
import numpy as np
#+end_src
#+RESULTS:
: None
#+begin_src python :results table
pd.DataFrame(np.array([[1,2,3],[4,5,6]]),
columns=['a','b','c'])
#+end_src
#+RESULTS:
| | a | b | c |
|---+---+---+---|
| 0 | 1 | 2 | 3 |
| 1 | 4 | 5 | 6 |
And the synchronous case?
#+begin_src python :results table :nasync no
pd.DataFrame(np.array([[1,2,3],[4,5,6]]),
columns=['a','b','c'])
#+end_src
#+RESULTS:
| | a | b | c |
|---+---+---+---|
| 0 | 1 | 2 | 3 |
| 1 | 4 | 5 | 6 |
Without session ?
#+begin_src python :results table :session none
pd.DataFrame(np.array([[1,2,3],[4,5,6]]),
columns=['a','b','c'])
#+end_src
#+RESULTS:
| | a | b | c |
|---+---+---+---|
| 0 | 1 | 2 | 3 |
| 1 | 4 | 5 | 6 |
Right, we need to import the libraries (no session).
#+begin_src python :results table :session none
import pandas as pd
import numpy as np
pd.DataFrame(np.array([[1,2,3],[4,5,6]]),
columns=['a','b','c'])
#+end_src
#+RESULTS:
| | a | b | c |
|---+---+---+---|
| 0 | 1 | 2 | 3 |
| 1 | 4 | 5 | 6 |
** inline examples
A simple asynchronous inline src_python{3*2} {{{results(=6=)}}}.
An other one containing a mistake src_python{2/0} {{{results(=6=)}}}
(click on the error to see the details).
Some very slow inline asynchronous computations that all run in
the same session. You need to execute the 3 of them at once. Here
is the first one src_python[:return "\"OK1\""]{import time;
time.sleep(5)} {{{results(=OK1=)}}} and a second one
src_python[:return "\"OK1 bis\""]{import time; time.sleep(5)}
{{{results(=OK1 bis=)}}} and the third one src_python[:return
"\"OK2\""]{import time; time.sleep(5)} {{{results(=OK2=)}}}.
Yes, the previous paragraph is unreadable; it's on purpose, to
check that ob-core can figure it out.
Let's repeat, in a more readable way, and making the last one
synchronous.
Some very slow inline computations that all run in the same
session. Here is the first asynchronous one
src_python[:return"\"OK1\""]{import time; time.sleep(5)} {{{results(=None=)}}}
and a second one, asynchronous too:
src_python[:return "\"OK1 bis\""]{import time; time.sleep(5)} {{{results(=OK1 bis=)}}}
and finally, a third one, synchronous this one:
src_python[:nasync no :return "\"OK2\""]{import time; time.sleep(5)} {{{results(=OK2=)}}}.
Note that, once the user executes the last synchronous block, the
user is blocked until the synchronous execution can start
(i.e. all previous asynchronous executions are done) and until
it's done. The display is updated though, to see the asynchronous
progress.
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