From: Gregor Zattler <telegraph@gmx.net>
To: notmuch <notmuch@notmuchmail.org>
Subject: out of memory on idle machine (was: Re: consistent database corruption with notmuch new)
Date: Sat, 30 Jan 2021 09:54:32 +0100 [thread overview]
Message-ID: <20210130085432.GA14025@no.workgroup> (raw)
In-Reply-To: <20201214192251.GA7858@no.workgroup>
Hi notmuch developers,,
* Gregor Zattler <telegraph@gmx.net> [14. Dez. 2020]:
> notmuch new still corrupts the database, the second notmuch new
> invocation finds emails the first did not find.
I'm still searching for the reason notmuch chokes on my mails.
I assembled a HP MicroServer, installed basic debian buster and
notmuch from the debian buster repo, rsynced my mail to a
separate file system symlinked to the same location as on my
laptop.
There are now
grfz@mic:~/Mail$ find -type f | wc -l
1209419
files on this file system. no other process touches this
file system, actually the machine is otherwise ilde.
I did notmuch new several times in a row:
grfz@mic:~/Mail/.notmuch$ rm -rf xapian
grfz@mic:~/Mail/.notmuch$ notmuch new
Welcome to a new version of notmuch! Your database will now be upgraded.
This process is safe to interrupt.
Backing up tags to /home/grfz/Mail/.notmuch/dump-20210127T114210.gz...
Your notmuch database has now been upgraded.
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607947606.8134_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607940473.9509_1.no:2,S
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607969276.21046_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607987211.1395_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607979988.4942_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607972847.4857_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607943993.24776_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607976389.23296_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607983586.19063_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/drafts.mbox
Note: Ignoring non-mail file: /home/grfz/Mail/postponed.mbox
Processed 1183682 total files in 16h 43m 27s (19 files/sec.).
Added 1091038 new messages to the database.
grfz@mic:~/Mail/.notmuch$ notmuch new
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607947606.8134_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607940473.9509_1.no:2,S
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607969276.21046_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607987211.1395_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607979988.4942_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607972847.4857_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607943993.24776_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607976389.23296_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607983586.19063_1.no:2,
Processed 1169095 total files in 16h 52m 48s (19 files/sec.).
Added 1077686 new messages to the database.
grfz@mic:~/Mail/.notmuch$ notmuch new
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607947606.8134_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607940473.9509_1.no:2,S
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607969276.21046_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607987211.1395_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607979988.4942_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607972847.4857_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607943993.24776_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607976389.23296_1.no:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607983586.19063_1.no:2,
Processed 1151900 total files in 16h 59m 36s (18 files/sec.).
Added 1050106 new messages to the database.
grfz@mic:~/Mail/.notmuch$ notmuch new
add_file: Out of memory files/sec.).
Processed 205 total files in 6s (29 files/sec.).
Added 193 new messages to the database.
Note: A fatal error was encountered: Out of memory
grfz@mic:~/Mail/.notmuch$
notmuch new processes not all files, later invocations
re-add most of the files and the fourth notmuch new
invocation runs out of memory after a few seconds.
This machine has
grfz@mic:~/Mail$ free
total used free shared buff/cache available
Mem: 16394760 222272 2293404 5464 13879084 15831448
Swap: 15622140 15104 15607036
enough memory. It's ECC Memory.
Any ideas on what is the cause of this? Even if we ignore the
out-of-memory condition: Why does notmuch re-add a million
already added files?
Ciao; Gregor
+ my-fetchmail.services stop
+ /home/grfz/bin/notmuch-new.screen-locked--low-load
+ sed -i -e 's/^#exit 0$/exit 0/' /home/grfz/bin/notmuch-new.screen-locked--low-load
+ sleep 77
+ my-fetchmail.services stop
/home/grfz/bin/my-notmuch-renew: line 4: my-fetchmail.services: command not found
+ /home/grfz/bin/notmuch-new.screen-locked--low-load
+ sed -i -e 's/^#exit 0$/exit 0/' /home/grfz/bin/notmuch-new.screen-locked--low-load
+ sleep 77
++ date +%F.%s
+ TAGSpreREINDEX=/home/grfz/Mail/.notmuch/notmuch.dump.2019-05-29.1559166634
+ notmuch dump --gzip --format=batch-tag --output=/home/grfz/Mail/.notmuch/notmuch.dump.2019-05-29.1559166634
++ date +%F.%s
+ mv /home/grfz/Mail/.notmuch/xapian /home/grfz/Mail/.notmuch/xapian.2019-05-29.1559166684
+ notmuch config set query.all '(is:spam OR NOT is:spam OR is:deleted OR NOT is:deleted)'
+ notmuch config set query.izt-all 'query:all AND (is:izt OR (NOT is:izt AND (path:IZT-EDV/** OR path:IZT/**)))'
+ notmuch config set query.izt-edv '(is:izt OR path:IZT-EDV/**) AND (from:science-computing OR to:science-computing OR from:ATOS OR to:ATOS OR to:izt@2cal.de OR from:info@ralf-voegtle.de OR from:info@andresedv.de)'
+ notmuch config set query.izt-robots 'is:izt AND NOT path:IZT/** AND NOT path:sent/** AND NOT query:izt-edv'
+ notmuch config set query.izt '(is:izt OR path:IZT/**) AND NOT path:IZT-EDV/** AND NOT query:izt-edv)'
+ notmuch config set index.header.List List-Id
+ notmuch config set index.header.Spamgrfz X-Spam-grfz-Status
+ notmuch config set index.header.UserAgent User-Agent
+ notmuch config set index.header.XLabel X-Label
+ notmuch new
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1519322404.860_1.len:2,
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1525795204.16507_1.len:2,S
Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1514242825.4116_1.len:2,S
Note: Ignoring non-mail file: /home/grfz/Mail/~ml/linux-crypto@nl.linux.org/cur/1054419557.21641_405.pit:2,
Note: Ignoring non-mail file: /home/grfz/Mail/~ml/linux-crypto@nl.linux.org/cur/1054419557.21641_525.pit:2,
Note: Ignoring non-mail file: /home/grfz/Mail/~ml/linux-crypto@nl.linux.org/cur/1054419557.21641_685.pit:2,
Note: Ignoring non-mail file: /home/grfz/Mail/rmlint.sh~
Note: Ignoring non-mail file: /home/grfz/Mail/postponed.mbox
Note: Ignoring non-mail file: /home/grfz/Mail/drafts.mbox
Note: Ignoring non-mail file: /home/grfz/Mail/rmlint.sh
Welcome to a new version of notmuch! Your database will now be upgraded.
This process is safe to interrupt.
Backing up tags to /home/grfz/Mail/.notmuch/dump-20190529T215124.gz...
Your notmuch database has now been upgraded.
Processed 1036956 total files in 2h 21m 25s (122 files/sec.).
Added 945879 new messages to the database.
+ notmuch tag --batch -new -inbox -unread '*'
Can't specify both cmdline and stdin!
+ notmuch restore --accumulate --format=batch-tag --input=/home/grfz/Mail/.notmuch/notmuch.dump.2019-05-29.1559166634
Warning: cannot apply tags to missing message: notmuch-sha1-e584281f598522d172e73617da020e2f914ccb7e
Warning: cannot apply tags to missing message: notmuch-sha1-5b56ca3568715b006eddd35a597ca7654be045f9
Warning: cannot apply tags to missing message: notmuch-sha1-00ab3ac6e631287f0f6dffaf0037bb7ef86f9e47
Warning: cannot apply tags to missing message: notmuch-sha1-72bde4c427b04c1cbac4a2c2b3a94402616917d7
Warning: cannot apply tags to missing message: notmuch-sha1-dbd41b3c6736943ef17eff9c6862dfa3703af020
Warning: cannot apply tags to missing message: notmuch-sha1-f17b642c650ba54b67b9d4ff5a338143a73f8b7b
Warning: cannot apply tags to missing message: notmuch-sha1-e1cf1219c1fb10a55ba30ca590b93eaf33fdae27
Warning: cannot apply tags to missing message: notmuch-sha1-0d5aaa420dc9e9505cced7c5d8f4c15e0c88c5ef
Warning: cannot apply tags to missing message: notmuch-sha1-a31480a6ef2520153b778dc9531f2c982a79ba32
Warning: cannot apply tags to missing message: notmuch-sha1-606e94dbe6e46b9df83d77ffa788429523e39646
Warning: cannot apply tags to missing message: notmuch-sha1-bb586b264c94f23d9e826071d8841d542ca95c75
Warning: cannot apply tags to missing message: notmuch-sha1-06d4d1492c70aa544b1deeaf7895ca85fe634670
Warning: cannot apply tags to missing message: notmuch-sha1-253991559a5e3c2d5cf1234b761e52ea09aa693f
++ date +%F.%s
+ notmuch dump --gzip --output=/home/grfz/Mail/.notmuch/notmuch.dump.2019-05-30.1559177807
++ date +%F.%s
+ notmuch compact --backup=/home/grfz/Mail/.notmuch/xapian.2019-05-30.1559177848
Compacting database...
compacting table postlist
Reduced by 36% 908856K (2488312K -> 1579456K)
compacting table docdata
Reduced by 49% 312K (632K -> 320K)
compacting table termlist
Reduced by 47% 1701792K (3551384K -> 1849592K)
compacting table position
Reduced by 45% 3375368K (7372720K -> 3997352K)
compacting table spelling
doesn't exist
compacting table synonym
doesn't exist
The old database has been moved to /home/grfz/Mail/.notmuch/xapian.2019-05-30.1559177848.
Done.
+ sed -i -e 's/^exit 0$/#exit 0/' /home/grfz/bin/notmuch-new.screen-locked--low-load
+ my-fetchmail.services stop
+ /home/grfz/bin/notmuch-new.screen-locked--low-load
+ sed -i -e 's/^#exit 0$/exit 0/' /home/grfz/bin/notmuch-new.screen-locked--low-load
+ sleep 77
++ date +%F.%s
+ TAGSpreREINDEX=/home/grfz/Mail/.notmuch/notmuch.dump.2019-05-30.1559214465
+ notmuch dump --gzip --format=batch-tag --output=/home/grfz/Mail/.notmuch/notmuch.dump.2019-05-30.1559214465
++ date +%F.%s
+ mv /home/grfz/Mail/.notmuch/xapian /home/grfz/Mail/.notmuch/xapian.2019-05-30.1559214505
+ notmuch config set query.all '(is:spam OR NOT is:spam OR is:deleted OR NOT is:deleted)'
+ notmuch config set query.izt-all 'query:all AND (is:izt OR (NOT is:izt AND (path:IZT-EDV/** OR path:IZT/**)))'
+ notmuch config set query.izt-edv '(is:izt OR path:IZT-EDV/**) AND (from:science-computing OR to:science-computing OR from:ATOS OR to:ATOS OR to:izt@2cal.de OR from:info@ralf-voegtle.de OR from:info@andresedv.de)'
+ notmuch config set query.izt-robots 'is:izt AND NOT path:IZT/** AND NOT path:sent/** AND NOT query:izt-edv'
+ notmuch config set query.izt '(is:izt OR path:IZT/**) AND NOT path:IZT-EDV/** AND NOT query:izt-edv)'
+ notmuch config set index.header.List List-Id
+ notmuch config set index.header.Spamgrfz X-Spam-grfz-Status
+ notmuch config set index.header.UserAgent User-Agent
+ notmuch config set index.header.XLabel X-Label
+ notmuch config set index.header.DeliveredTo Delivered-To
+ notmuch config set index.header.DeliveryDate Delivery-date
+ notmuch new
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
Stopping...
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+ my-fetchmail.services stop
+ rm -rf /home/grfz/Mail/.notmuch/xapian
+ notmuch config set query.all '(is:spam OR NOT is:spam OR is:deleted OR NOT is:deleted)'
+ notmuch config set query.izt-all 'query:all AND (is:izt OR (NOT is:izt AND (path:IZT-EDV/** OR path:IZT/**)))'
+ notmuch config set query.izt-edv '(is:izt OR path:IZT-EDV/**) AND (from:science-computing OR to:science-computing OR from:ATOS OR to:ATOS OR to:izt@2cal.de OR from:info@ralf-voegtle.de OR from:info@andresedv.de)'
+ notmuch config set query.izt-robots 'is:izt AND NOT path:IZT/** AND NOT path:sent/** AND NOT query:izt-edv'
+ notmuch config set query.izt '(is:izt OR path:IZT/**) AND NOT path:IZT-EDV/** AND NOT query:izt-edv)'
+ notmuch config set index.header.List List-Id
+ notmuch config set index.header.Spamgrfz X-Spam-grfz-Status
+ notmuch config set index.header.UserAgent User-Agent
+ notmuch config set index.header.XLabel X-Label
+ notmuch config set index.header.DeliveredTo Delivered-To
+ notmuch config set index.header.DeliveryDate Delivery-date
+ notmuch config set index.header.To To
+ notmuch config set index.header.Cc Cc
+ notmuch config set index.header.Sender Sender
+ notmuch config set index.header.InReplyTo In-Reply-To
+ notmuch config set index.header.ReplyTo Reply-To
+ notmuch new
Note: Ignoring non-mail file: /home/grfz/Mail/rmlint.sh~
Note: Ignoring non-mail file: /home/grfz/Mail/postponed.mbox
Note: Ignoring non-mail file: /home/grfz/Mail/drafts.mbox
Note: Ignoring non-mail file: /home/grfz/Mail/rmlint.sh
Welcome to a new version of notmuch! Your database will now be upgraded.
This process is safe to interrupt.
Backing up tags to /home/grfz/Mail/.notmuch/dump-20190530T135332.gz...
Your notmuch database has now been upgraded.
Processed 1037014 total files in 2h 42m 32s (106 files/sec.).
Added 945937 new messages to the database.
+ notmuch tag -new -inbox -unread '*'
+ notmuch restore --accumulate --format=batch-tag --input=/home/grfz/Mail/.notmuch/notmuch.dump.2019-05-30.1559214465
++ date +%F.%s
+ notmuch dump --gzip --output=/home/grfz/Mail/.notmuch/notmuch.dump.2019-05-30.1559241909
++ date +%F.%s
+ notmuch compact --backup=/home/grfz/Mail/.notmuch/xapian.2019-05-30.1559241950
Compacting database...
compacting table postlist
Reduced by 36% 1001496K (2707600K -> 1706104K)
compacting table docdata
Reduced by 51% 336K (656K -> 320K)
compacting table termlist
Reduced by 47% 1837496K (3836392K -> 1998896K)
compacting table position
Reduced by 45% 3875240K (8440616K -> 4565376K)
compacting table spelling
doesn't exist
compacting table synonym
doesn't exist
The old database has been moved to /home/grfz/Mail/.notmuch/xapian.2019-05-30.1559241950.
Done.
+ sed -i -e 's/^exit 0$/#exit 0/' /home/grfz/bin/notmuch-new.screen-locked--low-load
++ date
+ echo Start @ Sa 1. Jun 16:50:23 CEST 2019
Start @ Sa 1. Jun 16:50:23 CEST 2019
+ /home/grfz/bin/my-fetchmail.services stop
+ /home/grfz/bin/notmuch-new.screen-locked--low-load
+ sed -i -e 's/^#exit 0$/exit 0/' /home/grfz/bin/notmuch-new.screen-locked--low-load
+ sleep 77
++ date +%F.%s
+ TAGSpreREINDEX=/home/grfz/Mail/.notmuch/notmuch.dump.2019-06-01.1559400706
+ notmuch dump --gzip --format=batch-tag --output=/home/grfz/Mail/.notmuch/notmuch.dump.2019-06-01.1559400706
++ date +%F.%s
+ mv /home/grfz/Mail/.notmuch/xapian /home/grfz/Mail/.notmuch/xapian.2019-06-01.1559400744
+ rm -rf /home/grfz/Mail/.notmuch/xapian
+ notmuch config set query.all '(is:spam OR NOT is:spam OR is:deleted OR NOT is:deleted)'
+ notmuch config set query.izt-all 'query:all AND (is:izt OR (NOT is:izt AND (path:IZT-EDV/** OR path:IZT/**)))'
+ notmuch config set query.izt-edv '(is:izt OR path:IZT-EDV/**) AND (from:science-computing OR to:science-computing OR from:ATOS OR to:ATOS OR to:izt@2cal.de OR from:info@ralf-voegtle.de OR from:info@andresedv.de)'
+ notmuch config set query.izt-robots 'is:izt AND NOT path:IZT/** AND NOT path:sent/** AND NOT query:izt-edv'
+ notmuch config set query.izt '(is:izt OR path:IZT/**) AND NOT path:IZT-EDV/** AND NOT query:izt-edv)'
+ notmuch config set index.header.List List-Id
+ notmuch config set index.header.Spamgrfz X-Spam-grfz-Status
+ notmuch config set index.header.UserAgent User-Agent
+ notmuch config set index.header.XLabel X-Label
+ notmuch config set index.header.DeliveredTo Delivered-To
+ notmuch config set index.header.DeliveryDate Delivery-date
+ notmuch config set index.header.To To
+ notmuch config set index.header.Cc Cc
+ notmuch config set index.header.Sender Sender
+ notmuch config set index.header.InReplyTo In-Reply-To
+ notmuch config set index.header.ReplyTo Reply-To
+ notmuch config set index.header.Received Received
+ notmuch new
Note: Ignoring non-mail file: /home/grfz/Mail/rmlint.sh~
Note: Ignoring non-mail file: /home/grfz/Mail/postponed.mbox
Note: Ignoring non-mail file: /home/grfz/Mail/drafts.mbox
Note: Ignoring non-mail file: /home/grfz/Mail/rmlint.sh
Welcome to a new version of notmuch! Your database will now be upgraded.
This process is safe to interrupt.
Backing up tags to /home/grfz/Mail/.notmuch/dump-20190601T145224.gz...
Your notmuch database has now been upgraded.
Processed 1037381 total files in 2h 54m 22s (99 files/sec.).
Added 946288 new messages to the database.
+ notmuch tag -inbox -unread '*'
+ notmuch restore --accumulate --format=batch-tag --input=/home/grfz/Mail/.notmuch/notmuch.dump.2019-06-01.1559400706
++ date +%F.%s
+ notmuch dump --gzip --output=/home/grfz/Mail/.notmuch/notmuch.dump.2019-06-01.1559419342
++ date +%F.%s
+ notmuch compact --backup=/home/grfz/Mail/.notmuch/xapian.2019-06-01.1559419387
Compacting database...
compacting table postlist
Reduced by 37% 1077536K (2904400K -> 1826864K)
compacting table docdata
Reduced by 48% 304K (624K -> 320K)
compacting table termlist
Reduced by 48% 2004432K (4166496K -> 2162064K)
compacting table position
Reduced by 46% 4498968K (9748816K -> 5249848K)
compacting table spelling
doesn't exist
compacting table synonym
doesn't exist
The old database has been moved to /home/grfz/Mail/.notmuch/xapian.2019-06-01.1559419387.
Done.
+ sed -i -e 's/^exit 0$/#exit 0/' /home/grfz/bin/notmuch-new.screen-locked--low-load
+ sleep 77
+ my-fetchmail.services start
/home/grfz/bin/my-notmuch-renew: line 48: my-fetchmail.services: command not found
++ date
+ echo End @ Sa 1. Jun 22:10:51 CEST 2019
End @ Sa 1. Jun 22:10:51 CEST 2019
++ date
+ echo Start @ So 2. Jun 00:45:52 CEST 2019
Start @ So 2. Jun 00:45:52 CEST 2019
+ /home/grfz/bin/my-fetchmail.services stop
+ /home/grfz/bin/notmuch-new.screen-locked--low-load
+ sed -i -e 's/^#exit 0$/exit 0/' /home/grfz/bin/notmuch-new.screen-locked--low-load
+ sleep 77
++ date +%F.%s
+ TAGSpreREINDEX=/home/grfz/Mail/.notmuch/notmuch.dump.2019-06-02.1559429235
+ notmuch dump --gzip --format=batch-tag --output=/home/grfz/Mail/.notmuch/notmuch.dump.2019-06-02.1559429235
++ date
+ echo Start @ Di 4. Jun 20:54:03 CEST 2019
Start @ Di 4. Jun 20:54:03 CEST 2019
+ /home/grfz/bin/my-fetchmail.services stop
+ /home/grfz/bin/notmuch-new.screen-locked--low-load
+ sed -i -e 's/^#exit 0$/exit 0/' /home/grfz/bin/notmuch-new.screen-locked--low-load
+ sleep 77
++ date +%F.%s
+ TAGSpreREINDEX=/home/grfz/Mail/.notmuch/notmuch.dump.2019-06-04.1559674534
+ notmuch dump --gzip --format=batch-tag --output=/home/grfz/Mail/.notmuch/notmuch.dump.2019-06-04.1559674534
++ date +%F.%s
+ mv /home/grfz/Mail/.notmuch/xapian /home/grfz/Mail/.notmuch/xapian.2019-06-04.1559674574
+ rm -rf /home/grfz/Mail/.notmuch/xapian
+ notmuch config set query.all '(is:spam OR NOT is:spam OR is:deleted OR NOT is:deleted)'
+ notmuch config set query.izt-all 'query:all AND (is:izt OR (NOT is:izt AND (path:IZT-EDV/** OR path:IZT/**)))'
+ notmuch config set query.izt-edv '(is:izt OR path:IZT-EDV/**) AND (from:science-computing OR to:science-computing OR from:ATOS OR to:ATOS OR to:izt@2cal.de OR from:info@ralf-voegtle.de OR from:info@andresedv.de)'
+ notmuch config set query.izt-robots 'is:izt AND NOT path:IZT/** AND NOT path:sent/** AND NOT query:izt-edv'
+ notmuch config set query.izt '(is:izt OR path:IZT/**) AND NOT path:IZT-EDV/** AND NOT query:izt-edv)'
+ notmuch config set index.header.List List-Id
+ notmuch config set index.header.Spamgrfz X-Spam-grfz-Status
+ notmuch config set index.header.UserAgent User-Agent
+ notmuch config set index.header.XLabel X-Label
+ notmuch config set index.header.DeliveredTo Delivered-To
+ notmuch config set index.header.DeliveryDate Delivery-date
+ notmuch config set index.header.To To
+ notmuch config set index.header.Cc Cc
+ notmuch config set index.header.Sender Sender
+ notmuch config set index.header.InReplyTo In-Reply-To
+ notmuch config set index.header.ReplyTo Reply-To
+ notmuch config set index.header.Received Received
+ notmuch new
Note: Ignoring non-mail file: /home/grfz/Mail/postponed.mbox
Note: Ignoring non-mail file: /home/grfz/Mail/drafts.mbox
Welcome to a new version of notmuch! Your database will now be upgraded.
This process is safe to interrupt.
Backing up tags to /home/grfz/Mail/.notmuch/dump-20190604T185615.gz...
Your notmuch database has now been upgraded.
Processed 1034784 total files in 3h 16m 21s (87 files/sec.).
Added 944525 new messages to the database.
+ notmuch tag -inbox -unread '*'
+ notmuch restore --accumulate --format=batch-tag --input=/home/grfz/Mail/.notmuch/notmuch.dump.2019-06-04.1559674534
++ date +%F.%s
+ notmuch dump --gzip --output=/home/grfz/Mail/.notmuch/notmuch.dump.2019-06-05.1559694905
++ date +%F.%s
+ notmuch compact --backup=/home/grfz/Mail/.notmuch/xapian.2019-06-05.1559694949
Compacting database...
compacting table postlist
Reduced by 37% 1073696K (2900248K -> 1826552K)
compacting table docdata
Reduced by 50% 328K (648K -> 320K)
compacting table termlist
Reduced by 48% 2003640K (4164728K -> 2161088K)
compacting table position
Reduced by 46% 4495744K (9743384K -> 5247640K)
compacting table spelling
doesn't exist
compacting table synonym
doesn't exist
The old database has been moved to /home/grfz/Mail/.notmuch/xapian.2019-06-05.1559694949.
Done.
+ sed -i -e 's/^exit 0$/#exit 0/' /home/grfz/bin/notmuch-new.screen-locked--low-load
+ sleep 77
+ my-fetchmail.services start
++ date
+ echo End @ Mi 5. Jun 02:44:58 CEST 2019
End @ Mi 5. Jun 02:44:58 CEST 2019
From: Gregor Zattler <telegraph@gmx.net>
To: notmuch <notmuch@notmuchmail.org>
Cc:
Bcc: Gregor Zattler <grfz@localhost>
Subject: out of memory on "empty" machine (was: Re: consistent database
corruption with notmuch new)
Reply-To:
In-Reply-To: <20201214192251.GA7858@no.workgroup>
Hi notmuch,
* Gregor Zattler <telegraph@gmx.net> [14. Dez. 2020]:
> Hi notmuch developers,
> * Gregor Zattler <telegraph@gmx.net> [13. Dez. 2020]:
>> * Gregor Zattler <telegraph@gmx.net> [13. Dez. 2020]:
>>> I now do a notmuch new with libxapian30 version 1.4.17-1
>>> and will report back in a few hours.
>>
>> The result is only slightly different from version 1.4.11:
>
> actually now I realized, that notmuch was not linked against
> libxapian v1.4.17-1.
>
> Now I build notmuch from master and linked it with
> libxapian 1.4.17-1. The result is almost the same, though:
> 0 (master *) grfz@no:~/Mail/.notmuch$ nice ionice -c3 notmuch new --full-scan ; nice ionice -c3 notmuch new --full-scan ; nice ionice -c3 notmuch new --full-scan
> Welcome to a new version of notmuch! Your database will now be upgraded.
> This process is safe to interrupt.
> Backing up tags to /home/grfz/Mail/.notmuch/dump-20201214T124836.gz...
> Your notmuch database has now been upgraded.
> Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607940473.9509_1.no:2,S
> Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607943993.24776_1.no:2,
> Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607947606.8134_1.no:2,
> Note: Ignoring non-mail file: /home/grfz/Mail/drafts.mbox
> Note: Ignoring non-mail file: /home/grfz/Mail/postponed.mbox
> Processed 1176599 total files in 3h 31m 23s (92 files/sec.).
> Added 1102787 new messages to the database.
> Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607940473.9509_1.no:2,S
> Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607943993.24776_1.no:2,
> Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607947606.8134_1.no:2,
> Note: Ignoring non-mail file: /home/grfz/Mail/drafts.mbox
> Note: Ignoring non-mail file: /home/grfz/Mail/postponed.mbox
> Processed 125008 total files in 44m 59s (46 files/sec.).
> Added 83898 new messages to the database.
> Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607940473.9509_1.no:2,S
> Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607943993.24776_1.no:2,
> Note: Ignoring non-mail file: /home/grfz/Mail/spam-old/cur/1607947606.8134_1.no:2,
> add_file: A Xapian exception occurred).
> A Xapian exception occurred at lib/message.cc:1182: Too few chunks of compressed data
> Processed 122480 total files in 42m 1s (48 files/sec.).
> Added 83907 new messages to the database.
> Note: A fatal error was encountered: A Xapian exception occurred
> 1 (master *) grfz@no:~/Mail/.notmuch$
>
> notmuch new still corrupts the database, the second notmuch new
> invocation finds emails the first did not find.
>
>
> Ciao, Gregor
> --
> -... --- .-. . -.. ..--.. ...-.-
>
>
Ciao, Gregor
--
-... --- .-. . -.. ..--.. ...-.-
next prev parent reply other threads:[~2021-01-30 9:00 UTC|newest]
Thread overview: 31+ messages / expand[flat|nested] mbox.gz Atom feed top
2020-12-13 13:19 consistent database corruption with notmuch new Gregor Zattler
2020-12-13 14:12 ` David Bremner
2020-12-13 14:15 ` Gregor Zattler
2020-12-13 15:13 ` Gregor Zattler
2020-12-13 18:10 ` David Bremner
2020-12-13 18:12 ` David Bremner
2020-12-14 19:19 ` David Bremner
2020-12-13 21:22 ` Gregor Zattler
2020-12-14 19:22 ` Gregor Zattler
2021-01-30 8:54 ` Gregor Zattler [this message]
2021-01-30 12:58 ` out of memory on idle machine (was: Re: consistent database corruption with notmuch new) David Bremner
2021-01-31 8:16 ` out of memory on idle machine Gregor Zattler
2021-01-31 20:21 ` Gregor Zattler
2021-02-03 11:32 ` David Bremner
2021-02-03 11:59 ` David Bremner
2021-02-07 21:46 ` Gregor Zattler
2021-02-11 10:53 ` David Bremner
2021-02-11 11:32 ` David Bremner
2021-03-17 19:47 ` bug: chokes on long directory names (was: Re: out of memory on idle machine) Gregor Zattler
2021-03-18 1:25 ` [PATCH] test: add known broken test for long directory bug David Bremner
2021-03-18 7:26 ` Tomi Ollila
2021-03-18 11:02 ` David Bremner
2021-03-20 13:10 ` [PATCH] lib/n_d_index_file: check return value from _n_m_add_filename David Bremner
2021-04-18 13:05 ` David Bremner
2021-03-18 1:39 ` bug: chokes on long directory names (was: Re: out of memory on idle machine) David Bremner
2021-02-12 4:19 ` out of memory on idle machine Olly Betts
2021-02-21 9:42 ` Gregor Zattler
2021-02-09 4:34 ` Olly Betts
2021-02-13 20:30 ` Gregor Zattler
2020-12-14 9:11 ` consistent database corruption with notmuch new David Edmondson
2020-12-14 12:27 ` Gregor Zattler
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