From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
To: Kyle Meyer <kyle@kyleam.com>
Cc: gwl-devel@gnu.org
Subject: Re: Next steps for the GWL
Date: Thu, 6 Jun 2019 22:29:08 +0200 [thread overview]
Message-ID: <87h892jw4r.fsf@mdc-berlin.de> (raw)
In-Reply-To: <87o93apx9w.fsf@kyleam.com>
Kyle Meyer <kyle@kyleam.com> writes:
> Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> writes:
>
>>> One of the things I'd love to do
>>> with GWL is to make it play well with git-annex, something that would
>>> almost certainly be too specific for GWL itself.
>
> [...]
>
>> I wonder what the protocol should look like. Should a workflow
>> explicitly request a “git annex” file or should it be up to the person
>> running the workflow, i.e. when “git annex” has been configured to be
>> the cache backend it would simply look up the declared input/output
>> files there.
>
> The latter is what I had in mind. One benefit I see of leaving it up to
> the configured backend is that it makes it easier to share a workflow
> with someone that doesn't have/want the requirements for a particular
> backend.
I agree, this would be convenient.
I’m not familiar with git annex. Would you be interested in drafting
this feature, e.g. by writing a patch or specifying how it should work
in detail?
>>>> * add support for executing processes in isolated environments
>>>> (containers) — this requires a better understanding of process inputs.
>
> [...]
>
>> This means that it can map file systems into the container and then run
>> the process expression in that environment.
>>
>> One thing I’m not happy about is that I can only mount directories, and
>> not individual files that have been declared as inputs. I’d like to
>> have more fine-grained access.
>
> Right, limiting to the declared files makes sense.
>
> With `docker run', you can give files to -v:
>
> % ls /tmp/ | wc -l
> 121
> % file /tmp/scratch
> /tmp/scratch: ASCII text
> % docker run -it --rm -v /tmp/scratch:/tmp/scratch busybox ls /tmp
> scratch
>
> It looks like using files works for `guix environment' too, which makes
> me think that call-with-container can handle receiving files in MOUNT.
>
> % guix environment -C --ad-hoc coreutils -- ls /tmp | wc -l
> 0
> % guix environment -C --expose=/tmp/scratch=/tmp/scratch --ad-hoc coreutils -- ls /tmp
> scratch
Oh, neat. I’ll give this a try later. Thanks!
--
Ricardo
next prev parent reply other threads:[~2019-06-06 20:29 UTC|newest]
Thread overview: 16+ messages / expand[flat|nested] mbox.gz Atom feed top
2019-05-29 13:47 Next steps for the GWL Ricardo Wurmus
2019-06-03 15:16 ` zimoun
2019-06-03 16:18 ` Ricardo Wurmus
2019-06-06 11:07 ` zimoun
2019-06-06 12:19 ` Ricardo Wurmus
2019-06-06 13:23 ` Pjotr Prins
2019-06-06 3:19 ` Kyle Meyer
2019-06-06 10:11 ` Ricardo Wurmus
2019-06-06 10:55 ` zimoun
2019-06-06 11:59 ` Ricardo Wurmus
2019-06-06 13:44 ` Pjotr Prins
2019-06-06 14:06 ` Pjotr Prins
2019-06-06 15:07 ` Kyle Meyer
2019-06-06 20:29 ` Ricardo Wurmus [this message]
2019-06-07 4:11 ` Kyle Meyer
2019-06-12 9:46 ` Ricardo Wurmus
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