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dkim=pass header.d=protonmail.com header.s=protonmail3 header.b=Wn1xnDAw; dmarc=pass (policy=quarantine) header.from=protonmail.com; spf=pass (aspmx1.migadu.com: domain of "help-guix-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="help-guix-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: -6.32 X-Spam-Score: -6.32 X-Migadu-Queue-Id: E6B12EAA6 X-TUID: Uc3tsYBdY70q Thank you for the replies! The `guix refresh --list-transitive` command was= helpful for what I was trying to do, although I now think I was going down= the wrong path. While checking things in my system, I noticed that the guix command that wa= s invoked under a root shell pointed to a different binary than under my us= er's shell. I assumed that having different versions of guix simultaneously= operating on the same store could cause lots of problems which are difficu= lt to explain, so I decided to reinstall the system from scratch, which did= not seem too troublesome since guix's commitment to declarative configurat= ion makes re-installation very easy. I had some issues where I saw error me= ssages similar to https://issues.guix.gnu.org/56005, which was speculated t= o be due to difficulties communicating with the server. So I just waited a = few days each time this happened and re-tried, and eventually I got the bar= e-bones config from the installer ISO to install to my machine. However, I am still seeing a similar problem to before, when I try to `guix= home reconfigure` the process starts building git-minimal. I stopped it im= mediately instead of waiting to see how far it got because this seemed to b= e the same behavior. I also found that `guix repl` produces an error that t= he __libc_pthread_init symbol is undefined in libpthread.so, although reade= lf tells me that the symbol exists. The symbol value is null which seems we= ird but I don't spend a lot of time looking at readelf output and every sym= bol in the '.rela.plt' section has a null value, so maybe this is expected.= The error occurs if I run guile without any arguments, from the guile-wrap= per used by guix. Running the system guile command works fine. Also, the error only occurs in the guix from `~/.config/guix/current/bin/gu= ix`. This runs by default because it is in my path first, but if I run `/ru= n/current-system/profile/bin/guix repl` then the program executes without i= ssue. I'm not sure if the one in /run is an older version that I shouldn't = use or if it's the one that I should be getting when I run plain guix (with= out a path). IIUC, `guix pull` is supposed to update the files in `~/.confi= g/guix/current` to be the correct ones, and the guile-wrapper is pointing t= o an absolute path of libpthread in the store as it should, so I'm not sure= how this error is occurring. The system has not changed much from the bare= -bones config, I just added tmux, vim, and nss-certs to make the TTY easier= to use and make sure I could download https urls. This seems strange. I'm going to keep looking into this, but hoping that so= mething above might sound familiar to someone.