* [PATCH] gnu: Add clustal omega.
@ 2015-03-31 14:35 Ricardo Wurmus
2015-04-01 9:13 ` Ludovic Courtès
0 siblings, 1 reply; 2+ messages in thread
From: Ricardo Wurmus @ 2015-03-31 14:35 UTC (permalink / raw)
To: Guix-devel
[-- Attachment #1: Type: text/plain, Size: 149 bytes --]
Hi Guix,
here's yet another sequence aligner with a funny name. This package
depends on argtable, for which I just submitted a patch.
~~ Ricardo
[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #2: 0001-gnu-Add-clustal-omega.patch --]
[-- Type: text/x-patch, Size: 1969 bytes --]
From 9c5b3c537f42d0ea97f8421e26ca036d9c2ba5f9 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Fri, 27 Mar 2015 10:09:10 +0100
Subject: [PATCH] gnu: Add clustal omega.
* gnu/packages/bioinformatics.scm (clustal-omega): New variable.
---
gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c8e6b48..18bc3a9 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -34,6 +34,7 @@
#:use-module (gnu packages ncurses)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages popt)
#:use-module (gnu packages python)
#:use-module (gnu packages statistics)
#:use-module (gnu packages swig)
@@ -364,6 +365,30 @@ multiple sequence alignments.")
"CLIPper is a tool to define peaks in CLIP-seq datasets.")
(license license:gpl2)))
+(define-public clustal-omega
+ (package
+ (name "clustal-omega")
+ (version "1.2.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "http://www.clustal.org/omega/clustal-omega-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "02ibkx0m0iwz8nscg998bh41gg251y56cgh86bvyrii5m8kjgwqf"))))
+ (build-system gnu-build-system)
+ (inputs
+ `(("argtable" ,argtable)))
+ (home-page "http://www.clustal.org/omega/")
+ (synopsis "Multiple sequence aligner for protein and DNA/RNA")
+ (description
+ "Clustal-Omega is a general purpose multiple sequence alignment (MSA)
+program for protein and DNA/RNA. It produces high quality MSAs and is capable
+of handling data-sets of hundreds of thousands of sequences in reasonable
+time.")
+ (license license:gpl2+)))
+
(define-public crossmap
(package
(name "crossmap")
--
2.1.0
^ permalink raw reply related [flat|nested] 2+ messages in thread
end of thread, other threads:[~2015-04-01 9:13 UTC | newest]
Thread overview: 2+ messages (download: mbox.gz follow: Atom feed
-- links below jump to the message on this page --
2015-03-31 14:35 [PATCH] gnu: Add clustal omega Ricardo Wurmus
2015-04-01 9:13 ` Ludovic Courtès
Code repositories for project(s) associated with this external index
https://git.savannah.gnu.org/cgit/guix.git
This is an external index of several public inboxes,
see mirroring instructions on how to clone and mirror
all data and code used by this external index.