From 9c5b3c537f42d0ea97f8421e26ca036d9c2ba5f9 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 27 Mar 2015 10:09:10 +0100 Subject: [PATCH] gnu: Add clustal omega. * gnu/packages/bioinformatics.scm (clustal-omega): New variable. --- gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c8e6b48..18bc3a9 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -34,6 +34,7 @@ #:use-module (gnu packages ncurses) #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) + #:use-module (gnu packages popt) #:use-module (gnu packages python) #:use-module (gnu packages statistics) #:use-module (gnu packages swig) @@ -364,6 +365,30 @@ multiple sequence alignments.") "CLIPper is a tool to define peaks in CLIP-seq datasets.") (license license:gpl2))) +(define-public clustal-omega + (package + (name "clustal-omega") + (version "1.2.1") + (source (origin + (method url-fetch) + (uri (string-append + "http://www.clustal.org/omega/clustal-omega-" + version ".tar.gz")) + (sha256 + (base32 + "02ibkx0m0iwz8nscg998bh41gg251y56cgh86bvyrii5m8kjgwqf")))) + (build-system gnu-build-system) + (inputs + `(("argtable" ,argtable))) + (home-page "http://www.clustal.org/omega/") + (synopsis "Multiple sequence aligner for protein and DNA/RNA") + (description + "Clustal-Omega is a general purpose multiple sequence alignment (MSA) +program for protein and DNA/RNA. It produces high quality MSAs and is capable +of handling data-sets of hundreds of thousands of sequences in reasonable +time.") + (license license:gpl2+))) + (define-public crossmap (package (name "crossmap") -- 2.1.0