From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
To: Guix-devel <guix-devel@gnu.org>
Subject: [PATCH] gnu: Add clustal omega.
Date: Tue, 31 Mar 2015 16:35:52 +0200 [thread overview]
Message-ID: <idjzj6tz12v.fsf@bimsb-sys02.mdc-berlin.net> (raw)
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Hi Guix,
here's yet another sequence aligner with a funny name. This package
depends on argtable, for which I just submitted a patch.
~~ Ricardo
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From 9c5b3c537f42d0ea97f8421e26ca036d9c2ba5f9 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Fri, 27 Mar 2015 10:09:10 +0100
Subject: [PATCH] gnu: Add clustal omega.
* gnu/packages/bioinformatics.scm (clustal-omega): New variable.
---
gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c8e6b48..18bc3a9 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -34,6 +34,7 @@
#:use-module (gnu packages ncurses)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages popt)
#:use-module (gnu packages python)
#:use-module (gnu packages statistics)
#:use-module (gnu packages swig)
@@ -364,6 +365,30 @@ multiple sequence alignments.")
"CLIPper is a tool to define peaks in CLIP-seq datasets.")
(license license:gpl2)))
+(define-public clustal-omega
+ (package
+ (name "clustal-omega")
+ (version "1.2.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "http://www.clustal.org/omega/clustal-omega-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "02ibkx0m0iwz8nscg998bh41gg251y56cgh86bvyrii5m8kjgwqf"))))
+ (build-system gnu-build-system)
+ (inputs
+ `(("argtable" ,argtable)))
+ (home-page "http://www.clustal.org/omega/")
+ (synopsis "Multiple sequence aligner for protein and DNA/RNA")
+ (description
+ "Clustal-Omega is a general purpose multiple sequence alignment (MSA)
+program for protein and DNA/RNA. It produces high quality MSAs and is capable
+of handling data-sets of hundreds of thousands of sequences in reasonable
+time.")
+ (license license:gpl2+)))
+
(define-public crossmap
(package
(name "crossmap")
--
2.1.0
next reply other threads:[~2015-03-31 14:36 UTC|newest]
Thread overview: 2+ messages / expand[flat|nested] mbox.gz Atom feed top
2015-03-31 14:35 Ricardo Wurmus [this message]
2015-04-01 9:13 ` [PATCH] gnu: Add clustal omega Ludovic Courtès
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