From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: Re: [PATCH] Update deeptools. Date: Thu, 3 Mar 2016 13:32:39 +0100 Message-ID: References: <20160303015005.GA28589@jasmine> Mime-Version: 1.0 Content-Type: text/plain; charset="utf-8" Content-Transfer-Encoding: quoted-printable Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:37497) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1abSR1-0004zl-RW for guix-devel@gnu.org; Thu, 03 Mar 2016 07:32:52 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1abSQy-000342-MC for guix-devel@gnu.org; Thu, 03 Mar 2016 07:32:51 -0500 Received: from sinope.bbbm.mdc-berlin.de ([141.80.25.23]:56357) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1abSQy-00033h-CK for guix-devel@gnu.org; Thu, 03 Mar 2016 07:32:48 -0500 In-Reply-To: <20160303015005.GA28589@jasmine> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org To: Leo Famulari Cc: guix-devel Leo Famulari writes: > On Mon, Feb 29, 2016 at 02:47:04PM +0100, Ricardo Wurmus wrote: >> Hi Guix, >>=20 >> the goal of this series of patches is to update deeptools. >>=20 >> First I moved the =E2=80=9C*-pysam=E2=80=9D packages from python.scm t= o >> bioinformatics.scm, then updated them. Then added =E2=80=9Cpybigwig=E2= =80=9D, cleaned >> up =E2=80=9Cdeeptools=E2=80=9D (used =E2=80=9Cpropagated-inputs=E2=80=9D= for no good reason), and >> finally updated the package. > > All look good, although can you say if pysam needs setuptools at > run-time? Or does it make sense to change it to a native-input? I just rebuild pysam with setuptools and cython moved to native-inputs and it seems all fine. I=E2=80=99ll push that commit too. Thanks for th= e hint and the review! ~~ Ricardo