From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
To: Andreas Enge <andreas@enge.fr>
Cc: 19708@debbugs.gnu.org
Subject: bug#19708: Bowtie fails to build
Date: Wed, 28 Jan 2015 15:11:06 +0100 [thread overview]
Message-ID: <idjwq476lmt.fsf@bimsb-sys02.mdc-berlin.net> (raw)
In-Reply-To: <20150127214727.GA6287@debian>
Andreas Enge writes:
> bowtie currently fails to build on all three architectures on hydra.
>
> On i686, the error message is:
> Makefile:146: *** bowtie2 compilation requires a 64-bit platform . Stop.
>
> Surprisingly, the same error message is shown on mip64el (!).
> From its description, I do not expect users to run the program on mips,
> so it might be the safest option to disable the build of these two
> architectures.
>
> On x86_64, the error message is
> g++: error: unrecognized command line option '-stdlib=libstdc++'
> See http://hydra.gnu.org/build/204787 .
This is odd. The Makefile only adds this option on MacOS:
MACOS = 0
ifneq (,$(findstring Darwin,$(shell uname)))
MACOS = 1
ifneq (,$(findstring 13,$(shell uname -r)))
CPP = clang++
CC = clang
EXTRA_FLAGS += -stdlib=libstdc++
endif
endif
Whether or not a platform is 64-bit is determined with uname. Both
these errors relate to using uname.
Is it not available at build time?
I can build the package just fine with:
guix build -S bowtie
...
guix enviroment --pure bowtie
make
~~ Ricardo
next prev parent reply other threads:[~2015-01-28 14:12 UTC|newest]
Thread overview: 5+ messages / expand[flat|nested] mbox.gz Atom feed top
2015-01-27 21:47 bug#19708: Bowtie fails to build Andreas Enge
2015-01-28 14:11 ` Ricardo Wurmus [this message]
2015-01-28 16:57 ` Andreas Enge
2015-01-29 10:01 ` Ricardo Wurmus
2015-01-30 16:07 ` Mark H Weaver
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