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From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
To: guix-devel <guix-devel@gnu.org>
Subject: [PATCH]: gnu: bowtie: only support x86_64-linux
Date: Thu, 29 Jan 2015 10:41:41 +0100	[thread overview]
Message-ID: <idjsiet7wkq.fsf@bimsb-sys02.mdc-berlin.net> (raw)

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Since bowtie's Makefile explicitly checks that the system it is built on
is x86_64 building on MIPS and i686 should be disabled.  (See bug#19708
for discussion.)

This is what the attached patch does.

~~ Ricardo


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From 9789efe14b8cf00ebf6b39a63146483fbe220535 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Thu, 29 Jan 2015 10:35:52 +0100
Subject: [PATCH] gnu: bowtie: only x86_64 is supported.

* gnu/packages/bioinformatics.scm (bowtie): Add 'supported-systems' field.
---
 gnu/packages/bioinformatics.scm | 1 +
 1 file changed, 1 insertion(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ff6c337..3ea82ba 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -133,6 +133,7 @@ aligning to relatively long (e.g. mammalian) genomes.  Bowtie 2 indexes the
 genome with an FM Index to keep its memory footprint small: for the human
 genome, its memory footprint is typically around 3.2 GB.  Bowtie 2 supports
 gapped, local, and paired-end alignment modes.")
+    (supported-systems '("x86_64-linux"))))
     (license license:gpl3+)))
 
 (define-public samtools
-- 
1.9.3


             reply	other threads:[~2015-01-29  9:41 UTC|newest]

Thread overview: 4+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2015-01-29  9:41 Ricardo Wurmus [this message]
2015-01-29 11:16 ` [PATCH]: gnu: bowtie: only support x86_64-linux Ricardo Wurmus
2015-01-29 11:20   ` Ricardo Wurmus
2015-01-30  4:38     ` Mark H Weaver

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