From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: [PATCH] Add r-doparallel. Date: Thu, 17 Mar 2016 17:22:04 +0100 Message-ID: Mime-Version: 1.0 Content-Type: multipart/mixed; boundary="=-=-=" Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:45549) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1agagi-0006fs-9b for guix-devel@gnu.org; Thu, 17 Mar 2016 12:22:17 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1agagf-0001cf-FK for guix-devel@gnu.org; Thu, 17 Mar 2016 12:22:16 -0400 Received: from venus.bbbm.mdc-berlin.de ([141.80.25.30]:55641) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1agagf-0001bm-1o for guix-devel@gnu.org; Thu, 17 Mar 2016 12:22:13 -0400 Received: from localhost (localhost [127.0.0.1]) by venus.bbbm.mdc-berlin.de (Postfix) with ESMTP id 671493805A9 for ; Thu, 17 Mar 2016 17:22:11 +0100 (CET) Received: from venus.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (venus.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id if0eJGdRFEe3 for ; Thu, 17 Mar 2016 17:22:05 +0100 (CET) Received: from HTCATWO.mdc-berlin.net (puck.citx.mdc-berlin.de [141.80.36.101]) (using TLSv1 with cipher ECDHE-RSA-AES256-SHA (256/256 bits)) (No client certificate requested) by venus.bbbm.mdc-berlin.de (Postfix) with ESMTPS for ; Thu, 17 Mar 2016 17:22:05 +0100 (CET) List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org To: guix-devel --=-=-= Content-Type: text/plain Attached are four patches for useful R packages. --=-=-= Content-Type: text/x-patch Content-Disposition: inline; filename="0001-gnu-Add-r-iterators.patch" >From ed52995e0723a9828f21e741f92439934470c4ac Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 17 Mar 2016 17:13:59 +0100 Subject: [PATCH 1/4] gnu: Add r-iterators. * gnu/packages/statistics.scm (r-iterators): New variable. --- gnu/packages/statistics.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 3d44533..217f365 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1679,6 +1679,26 @@ matrices. It includes Cholesky decomposition and backsolving as well as standard R subsetting and Kronecker products.") (license license:gpl2+))) +(define-public r-iterators + (package + (name "r-iterators") + (version "1.0.8") + (source + (origin + (method url-fetch) + (uri (cran-uri "iterators" version)) + (sha256 + (base32 + "1f057pabs7ss9h1n244can26qsi5n2k3salrdk0b0vkphlrs4kmf")))) + (build-system r-build-system) + (home-page "http://cran.r-project.org/web/packages/iterators") + (synopsis "Iterator construct for R") + (description + "This package provides support for iterators, which allow a programmer to +traverse through all the elements of a vector, list, or other collection of +data.") + (license license:asl2.0))) + (define-public r-dt (package (name "r-dt") -- 2.1.0 --=-=-= Content-Type: text/x-patch Content-Disposition: inline; filename="0002-gnu-Add-r-codetools.patch" >From eb559b54738d68a8dba5dd6b7089e4a20b6b8026 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 17 Mar 2016 17:14:22 +0100 Subject: [PATCH 2/4] gnu: Add r-codetools. * gnu/packages/statistics.scm (r-codetools): New variable. --- gnu/packages/statistics.scm | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 217f365..97481b8 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1699,6 +1699,24 @@ traverse through all the elements of a vector, list, or other collection of data.") (license license:asl2.0))) +(define-public r-codetools + (package + (name "r-codetools") + (version "0.2-14") + (source + (origin + (method url-fetch) + (uri (cran-uri "codetools" version)) + (sha256 + (base32 + "0y9r4m2b8xgavr89sc179knzwpz54xljbc1dinpq2q07i4xn0397")))) + (build-system r-build-system) + (home-page "http://cran.r-project.org/web/packages/codetools") + (synopsis "Code analysis tools for R") + (description "This package provides code analysis tools for R to check R +code for possible problems.") + (license (list license:gpl2+ license:gpl3+)))) + (define-public r-dt (package (name "r-dt") -- 2.1.0 --=-=-= Content-Type: text/x-patch Content-Disposition: inline; filename="0003-gnu-Add-r-foreach.patch" >From b752b7f2457d23a96d6556d9e24debb03219bc20 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 17 Mar 2016 17:14:45 +0100 Subject: [PATCH 3/4] gnu: Add r-foreach. * gnu/packages/statistics.scm (r-foreach): New variable. --- gnu/packages/statistics.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 97481b8..8116f50 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1717,6 +1717,34 @@ data.") code for possible problems.") (license (list license:gpl2+ license:gpl3+)))) +(define-public r-foreach + (package + (name "r-foreach") + (version "1.4.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "foreach" version)) + (sha256 + (base32 + "10aqsd3rxz03s1qdb6gsb1cj89mj4vmh491zfpin4skj1xvkzw0y")))) + (build-system r-build-system) + (propagated-inputs + `(("r-codetools" ,r-codetools) + ("r-iterators" ,r-iterators))) + (home-page "http://cran.r-project.org/web/packages/foreach") + (synopsis "Foreach looping construct for R") + (description + "This package provides support for the @code{foreach} looping construct. +@code{foreach} is an idiom that allows for iterating over elements in a +collection, without the use of an explicit loop counter. This package in +particular is intended to be used for its return value, rather than for its +side effects. In that sense, it is similar to the standard @code{lapply} +function, but doesn't require the evaluation of a function. Using +@code{foreach} without side effects also facilitates executing the loop in +parallel.") + (license license:asl2.0))) + (define-public r-dt (package (name "r-dt") -- 2.1.0 --=-=-= Content-Type: text/x-patch Content-Disposition: inline; filename="0004-gnu-Add-r-doparallel.patch" >From c386783cdba3798c881e0c8ff4b94baa785208f1 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 17 Mar 2016 17:15:02 +0100 Subject: [PATCH 4/4] gnu: Add r-doparallel. * gnu/packages/statistics.scm (r-doparallel): New variable. --- gnu/packages/statistics.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 8116f50..15c6823 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1745,6 +1745,29 @@ function, but doesn't require the evaluation of a function. Using parallel.") (license license:asl2.0))) +(define-public r-doparallel + (package + (name "r-doparallel") + (version "1.0.10") + (source + (origin + (method url-fetch) + (uri (cran-uri "doParallel" version)) + (sha256 + (base32 + "1mddx25l25pw9d0csnx2q203dbg5hbrhkr1f08kw0p02a1lln0kh")))) + (properties `((upstream-name . "doParallel"))) + (build-system r-build-system) + (propagated-inputs + `(("r-foreach" ,r-foreach) + ("r-iterators" ,r-iterators))) + (home-page "http://cran.r-project.org/web/packages/doParallel") + (synopsis "Foreach parallel adaptor for the 'parallel' package") + (description + "This package provides a parallel backend for the @code{%dopar%} function +using the parallel package.") + (license license:gpl2+))) + (define-public r-dt (package (name "r-dt") -- 2.1.0 --=-=-=--