* [PATCH]: Add HTSeq.
@ 2015-02-20 15:43 Ricardo Wurmus
2015-02-20 17:27 ` Andreas Enge
0 siblings, 1 reply; 2+ messages in thread
From: Ricardo Wurmus @ 2015-02-20 15:43 UTC (permalink / raw)
To: Guix-devel
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From 3b812ce1c3458f832aa6eaac0d15502832bae8d5 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Fri, 20 Feb 2015 16:41:50 +0100
Subject: [PATCH] gnu: Add HTSeq.
* gnu/packages/bioinformatics.scm (htseq): New variable.
---
gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c13e649..b64dab7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -311,6 +311,30 @@ several alignment strategies enable effective alignment of RNA-seq reads, in
particular, reads spanning multiple exons.")
(license license:gpl3+)))
+(define-public htseq
+ (package
+ (name "htseq")
+ (version "0.6.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://pypi.python.org/packages/source/H/HTSeq/HTSeq-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1i85ppf2j2lj12m0x690qq5nn17xxk23pbbx2c83r8ayb5wngzwv"))))
+ (build-system python-build-system)
+ (arguments `(#:python ,python-2)) ; only Python 2 is supported
+ (inputs
+ `(("python-numpy" ,python2-numpy)
+ ("python-setuptools" ,python2-setuptools)))
+ (home-page "http://www-huber.embl.de/users/anders/HTSeq/")
+ (synopsis "Analysing high-throughput sequencing data with Python")
+ (description
+ "HTSeq is a Python package that provides infrastructure to process data
+from high-throughput sequencing assays.")
+ (license license:gpl3+)))
+
(define-public rseqc
(package
(name "rseqc")
--
2.1.0
^ permalink raw reply related [flat|nested] 2+ messages in thread
* Re: [PATCH]: Add HTSeq.
2015-02-20 15:43 [PATCH]: Add HTSeq Ricardo Wurmus
@ 2015-02-20 17:27 ` Andreas Enge
0 siblings, 0 replies; 2+ messages in thread
From: Andreas Enge @ 2015-02-20 17:27 UTC (permalink / raw)
To: Ricardo Wurmus; +Cc: Guix-devel
Looks good, please push! It is a bit unfortunate that the sources themselves
do not mention the license (PKG-INFO states that the license is unknown), but
the web page is clear. So maybe you could make the suggestion for the next
release to update the PKG-INFO file, and to maybe add a COPYING to the tarball.
Andreas
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2015-02-20 15:43 [PATCH]: Add HTSeq Ricardo Wurmus
2015-02-20 17:27 ` Andreas Enge
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