[PATCH] Add r-seqlogo.

[PATCH] Add r-seqlogo.

[Ricardo Wurmus]

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From 1a23897008d3c0fc86459d111ad3847b404051b9 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Fri, 18 Mar 2016 12:15:24 +0100
Subject: [PATCH] gnu: Add r-seqlogo.

* gnu/packages/bioinformatics.scm (r-seqlogo): New variable.
---
 gnu/packages/bioinformatics.scm | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c7f50b9..b119fd2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4775,6 +4775,27 @@ annotations for the genome of the model fruit fly Drosophila melanogaster.")
 annotations for the genome of the model mouse Mus musculus.")
     (license license:artistic2.0)))
 
+(define-public r-seqlogo
+  (package
+    (name "r-seqlogo")
+    (version "1.36.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "seqLogo" version))
+       (sha256
+        (base32
+         "0kn1a1nf2j4v9c09vjkz9bmxlln7yhg87bnyrdsxy1m55x56rn5k"))))
+    (properties `((upstream-name . "seqLogo")))
+    (build-system r-build-system)
+    (home-page "http://bioconductor.org/packages/seqLogo")
+    (synopsis "Sequence logos for DNA sequence alignments")
+    (description
+     "seqLogo takes the position weight matrix of a DNA sequence motif and
+plots the corresponding sequence logo as introduced by Schneider and
+Stephens (1990).")
+    (license license:lgpl2.0+)))
+
 (define-public r-qtl
  (package
   (name "r-qtl")
-- 
2.1.0

Re: [PATCH] Add r-seqlogo.

[Leo Famulari]

On Wed, Apr 06, 2016 at 05:28:49PM +0200, Ricardo Wurmus wrote:
> From 1a23897008d3c0fc86459d111ad3847b404051b9 Mon Sep 17 00:00:00 2001
> From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
> Date: Fri, 18 Mar 2016 12:15:24 +0100
> Subject: [PATCH] gnu: Add r-seqlogo.
> 
> * gnu/packages/bioinformatics.scm (r-seqlogo): New variable.

LGTM!

> ---
>  gnu/packages/bioinformatics.scm | 21 +++++++++++++++++++++
>  1 file changed, 21 insertions(+)
> 
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index c7f50b9..b119fd2 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -4775,6 +4775,27 @@ annotations for the genome of the model fruit fly Drosophila melanogaster.")
>  annotations for the genome of the model mouse Mus musculus.")
>      (license license:artistic2.0)))
>  
> +(define-public r-seqlogo
> +  (package
> +    (name "r-seqlogo")
> +    (version "1.36.0")
> +    (source
> +     (origin
> +       (method url-fetch)
> +       (uri (bioconductor-uri "seqLogo" version))
> +       (sha256
> +        (base32
> +         "0kn1a1nf2j4v9c09vjkz9bmxlln7yhg87bnyrdsxy1m55x56rn5k"))))
> +    (properties `((upstream-name . "seqLogo")))
> +    (build-system r-build-system)
> +    (home-page "http://bioconductor.org/packages/seqLogo")
> +    (synopsis "Sequence logos for DNA sequence alignments")
> +    (description
> +     "seqLogo takes the position weight matrix of a DNA sequence motif and
> +plots the corresponding sequence logo as introduced by Schneider and
> +Stephens (1990).")
> +    (license license:lgpl2.0+)))
> +
>  (define-public r-qtl
>   (package
>    (name "r-qtl")
> -- 
> 2.1.0
> 
>