From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: [PATCH] Add r-motifrg. Date: Wed, 6 Apr 2016 17:33:24 +0200 Message-ID: Mime-Version: 1.0 Content-Type: text/x-patch Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:35148) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1anpSb-0004a6-9L for guix-devel@gnu.org; Wed, 06 Apr 2016 11:33:38 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1anpSV-0007HH-Hy for guix-devel@gnu.org; Wed, 06 Apr 2016 11:33:37 -0400 Received: from venus.bbbm.mdc-berlin.de ([141.80.25.30]:48569) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1anpSV-0007H9-Az for guix-devel@gnu.org; Wed, 06 Apr 2016 11:33:31 -0400 Received: from localhost (localhost [127.0.0.1]) by venus.bbbm.mdc-berlin.de (Postfix) with ESMTP id 83263380A66 for ; Wed, 6 Apr 2016 17:33:30 +0200 (CEST) Received: from venus.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (venus.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id oBfnVb0Sl1SB for ; Wed, 6 Apr 2016 17:33:25 +0200 (CEST) Received: from HTCATWO.mdc-berlin.net (puck.citx.mdc-berlin.de [141.80.36.101]) (using TLSv1 with cipher ECDHE-RSA-AES256-SHA (256/256 bits)) (No client certificate requested) by venus.bbbm.mdc-berlin.de (Postfix) with ESMTPS for ; Wed, 6 Apr 2016 17:33:24 +0200 (CEST) Content-Disposition: inline; filename="0001-gnu-Add-r-motifrg.patch" List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org To: guix-devel >From 82d9056a23f72d87aa8baa90398695aefea55879 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 18 Mar 2016 12:16:17 +0100 Subject: [PATCH] gnu: Add r-motifrg. * gnu/packages/bioinformatics.scm (r-motifrg): New variable. --- gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7692361..23d427e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4827,6 +4827,33 @@ Stephens (1990).") by UCSC (hg19, February 2009) and stored in Biostrings objects.") (license license:artistic2.0))) +(define-public r-motifrg + (package + (name "r-motifrg") + (version "1.14.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "motifRG" version)) + (sha256 + (base32 + "1v9zm5629k2lcqbbgw8bwflvbircyxkfavbkvmbd212kgwcng8vn")))) + (properties `((upstream-name . "motifRG"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biostrings" ,r-biostrings) + ("r-bsgenome" ,r-bsgenome) + ("r-bsgenome.hsapiens.ucsc.hg19" ,r-bsgenome-hsapiens-ucsc-hg19) + ("r-iranges" ,r-iranges) + ("r-seqlogo" ,r-seqlogo) + ("r-xvector" ,r-xvector))) + (home-page "http://bioconductor.org/packages/motifRG") + (synopsis "Discover motifs in high throughput sequencing data") + (description + "This package provides tools for discriminative motif discovery in high +throughput genetic sequencing data sets using regression methods.") + (license license:artistic2.0))) + (define-public r-qtl (package (name "r-qtl") -- 2.1.0