From 8cf38d1a43af8d89578e0604156d5097c88a212f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 30 Mar 2016 12:23:51 +0200 Subject: [PATCH 1/3] gnu: Add r-bsgenome-mmusculus-ucsc-mm9. * gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm9): New variable. --- gnu/packages/bioinformatics.scm | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9532e38..fd99ac4 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4943,6 +4943,37 @@ Stephens (1990).") by UCSC (hg19, February 2009) and stored in Biostrings objects.") (license license:artistic2.0))) +(define-public r-bsgenome-mmusculus-ucsc-mm9 + (package + (name "r-bsgenome-mmusculus-ucsc-mm9") + (version "1.4.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "http://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "BSgenome.Mmusculus.UCSC.mm9_" + version ".tar.gz")) + (sha256 + (base32 + "1birqw30g2azimxpnjfzmkphan7x131yy8b9h85lfz5fjdg7841i")))) + (properties + `((upstream-name . "BSgenome.Mmusculus.UCSC.mm9"))) + (build-system r-build-system) + ;; As this package provides little more than a very large data file it + ;; doesn't make sense to build substitutes. + (arguments `(#:substitutable? #f)) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome))) + (home-page + "http://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm9/") + (synopsis "Full genome sequences for Mouse") + (description + "This package provides full genome sequences for Mus musculus (Mouse) as +provided by UCSC (mm9, July 2007) and stored in Biostrings objects.") + (license license:artistic2.0))) + (define-public r-motifrg (package (name "r-motifrg") -- 2.1.0