From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: Re: [PATCH] gnu: Add multiqc. Date: Tue, 28 Jun 2016 16:56:32 +0200 Message-ID: References: <20160628145042.25341-1-ricardo.wurmus@mdc-berlin.de> Mime-Version: 1.0 Content-Type: text/plain; charset="utf-8" Content-Transfer-Encoding: quoted-printable Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:38608) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bHuRR-00043e-8Z for guix-devel@gnu.org; Tue, 28 Jun 2016 10:56:46 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1bHuRM-0006x7-7Y for guix-devel@gnu.org; Tue, 28 Jun 2016 10:56:45 -0400 Received: from sinope02.bbbm.mdc-berlin.de ([141.80.25.24]:44601) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bHuRL-0006x1-W9 for guix-devel@gnu.org; Tue, 28 Jun 2016 10:56:40 -0400 Received: from localhost (localhost [127.0.0.1]) by sinope02.bbbm.mdc-berlin.de (Postfix) with ESMTP id D06B4115ECC for ; Tue, 28 Jun 2016 16:56:38 +0200 (CEST) Received: from sinope02.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (sinope02.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id i0vm2XFXrkyD for ; Tue, 28 Jun 2016 16:56:33 +0200 (CEST) Received: from HTCATWO.mdc-berlin.net (puck.citx.mdc-berlin.de [141.80.36.101]) (using TLSv1 with cipher ECDHE-RSA-AES256-SHA (256/256 bits)) (No client certificate requested) by sinope02.bbbm.mdc-berlin.de (Postfix) with ESMTPS for ; Tue, 28 Jun 2016 16:56:33 +0200 (CEST) In-Reply-To: <20160628145042.25341-1-ricardo.wurmus@mdc-berlin.de> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: guix-devel@gnu.org Ricardo Wurmus writes: > * gnu/packages/bioinformatics.scm (multiqc): New variable. > --- > gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++ > 1 file changed, 30 insertions(+) > > diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformat= ics.scm > index 04ed769..45595d0 100644 > --- a/gnu/packages/bioinformatics.scm > +++ b/gnu/packages/bioinformatics.scm > @@ -5321,3 +5321,33 @@ group or two ChIP groups run under different con= ditions.") > (description "This program compares version strings. It intends= to be a > replacement for strverscmp.") > (license license:gpl3+)))) > + > +(define-public multiqc > + (package > + (name "multiqc") > + (version "0.6") > + (source > + (origin > + (method url-fetch) > + (uri (string-append > + "https://pypi.python.org/packages/23/d9/95a5e62eea95f2200= 07d7a6683d0da1ee1d9f99e6932bcff793b6601ef15/multiqc-" > + version ".tar.gz")) > + (sha256 > + (base32 > + "0avw11h63ldpxy5pizc3wl1wa01ha7q10wb240nggsjz3jaqvyiy")))) > + (build-system python-build-system) > + (propagated-inputs > + `(("python-jinja2" ,python-jinja2) > + ("python-simplejson" ,python-simplejson) > + ("python-pyyaml" ,python-pyyaml) > + ("python-click" ,python-click) > + ("python-matplotlib" ,python-matplotlib))) I sent this patch too early. The final version also has =E2=80=9Cpython-= numpy=E2=80=9D among its propagated inputs. Other than that there are no changes. > + (native-inputs > + `(("python-setuptools" ,python-setuptools))) > + (home-page "http://multiqc.info") > + (synopsis "Aggregate bioinformatics analysis reports") > + (description > + "MultiQC is a tool to aggregate bioinformatics results across man= y > +samples into a single report. It contains modules for a large number = of > +common bioinformatics tools.") > + (license license:gpl3)))