Re: [PATCH] gnu: Add multiqc.

[Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>]

Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> writes:

> * gnu/packages/bioinformatics.scm (multiqc): New variable.
> ---
>  gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++
>  1 file changed, 30 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index 04ed769..45595d0 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -5321,3 +5321,33 @@ group or two ChIP groups run under different conditions.")
>        (description "This program compares version strings.  It intends to be a
>  replacement for strverscmp.")
>        (license license:gpl3+))))
> +
> +(define-public multiqc
> +  (package
> +    (name "multiqc")
> +    (version "0.6")
> +    (source
> +     (origin
> +       (method url-fetch)
> +       (uri (string-append
> +             "https://pypi.python.org/packages/23/d9/95a5e62eea95f220007d7a6683d0da1ee1d9f99e6932bcff793b6601ef15/multiqc-"
> +             version ".tar.gz"))
> +       (sha256
> +        (base32
> +         "0avw11h63ldpxy5pizc3wl1wa01ha7q10wb240nggsjz3jaqvyiy"))))
> +    (build-system python-build-system)
> +    (propagated-inputs
> +     `(("python-jinja2" ,python-jinja2)
> +       ("python-simplejson" ,python-simplejson)
> +       ("python-pyyaml" ,python-pyyaml)
> +       ("python-click" ,python-click)
> +       ("python-matplotlib" ,python-matplotlib)))

I sent this patch too early.  The final version also has “python-numpy”
among its propagated inputs.  Other than that there are no changes.

> +    (native-inputs
> +     `(("python-setuptools" ,python-setuptools)))
> +    (home-page "http://multiqc.info")
> +    (synopsis "Aggregate bioinformatics analysis reports")
> +    (description
> +     "MultiQC is a tool to aggregate bioinformatics results across many
> +samples into a single report.  It contains modules for a large number of
> +common bioinformatics tools.")
> +    (license license:gpl3)))