* [PATCH] gnu: Add MACS.
@ 2015-02-26 16:12 Ricardo Wurmus
2015-02-28 14:54 ` Ludovic Courtès
0 siblings, 1 reply; 2+ messages in thread
From: Ricardo Wurmus @ 2015-02-26 16:12 UTC (permalink / raw)
To: Guix-devel
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From 9c69ab1e5f1091e1f36d8ca7716c7c394d09e4c2 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Thu, 26 Feb 2015 17:10:39 +0100
Subject: [PATCH] gnu: Add MACS.
* gnu/packages/bioinformatics.scm (macs): New variable.
---
gnu/packages/bioinformatics.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 749d0a0..0960329 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -448,6 +448,37 @@ particular, reads spanning multiple exons.")
from high-throughput sequencing assays.")
(license license:gpl3+)))
+(define-public macs
+ (package
+ (name "macs")
+ (version "2.1.0.20140616")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://pypi.python.org/packages/source/M/MACS2/MACS2-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "11lmiw6avqhwn75sn59g4lfkrr2kk20r3rgfbx9xfqb8rg9mi2n6"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:python ,python-2 ; only compatible with Python 2.7
+ #:tests? #f)) ; no test target
+ (inputs
+ `(("python-numpy" ,python2-numpy)))
+ (native-inputs
+ `(("python-setuptools" ,python2-setuptools)))
+ (home-page "http://github.com/taoliu/MACS/")
+ (synopsis "Model based analysis for ChIP-Seq data")
+ (description
+ "MACS is an implementation of a ChIP-Seq analysis algorithm for
+identifying transcript factor binding sites named Model-based Analysis of
+ChIP-Seq (MACS). MACS captures the influence of genome complexity to evaluate
+the significance of enriched ChIP regions and it improves the spatial
+resolution of binding sites through combining the information of both
+sequencing tag position and orientation.")
+ (license license:bsd-3)))
+
(define-public rseqc
(package
(name "rseqc")
--
2.1.0
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2015-02-26 16:12 [PATCH] gnu: Add MACS Ricardo Wurmus
2015-02-28 14:54 ` Ludovic Courtès
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