* [PATCH] gnu: Add MACS.
@ 2015-02-26 16:12 Ricardo Wurmus
2015-02-28 14:54 ` Ludovic Courtès
0 siblings, 1 reply; 2+ messages in thread
From: Ricardo Wurmus @ 2015-02-26 16:12 UTC (permalink / raw
To: Guix-devel
[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #1: 0001-gnu-Add-MACS.patch --]
[-- Type: text/x-patch, Size: 2018 bytes --]
From 9c69ab1e5f1091e1f36d8ca7716c7c394d09e4c2 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Thu, 26 Feb 2015 17:10:39 +0100
Subject: [PATCH] gnu: Add MACS.
* gnu/packages/bioinformatics.scm (macs): New variable.
---
gnu/packages/bioinformatics.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 749d0a0..0960329 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -448,6 +448,37 @@ particular, reads spanning multiple exons.")
from high-throughput sequencing assays.")
(license license:gpl3+)))
+(define-public macs
+ (package
+ (name "macs")
+ (version "2.1.0.20140616")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://pypi.python.org/packages/source/M/MACS2/MACS2-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "11lmiw6avqhwn75sn59g4lfkrr2kk20r3rgfbx9xfqb8rg9mi2n6"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:python ,python-2 ; only compatible with Python 2.7
+ #:tests? #f)) ; no test target
+ (inputs
+ `(("python-numpy" ,python2-numpy)))
+ (native-inputs
+ `(("python-setuptools" ,python2-setuptools)))
+ (home-page "http://github.com/taoliu/MACS/")
+ (synopsis "Model based analysis for ChIP-Seq data")
+ (description
+ "MACS is an implementation of a ChIP-Seq analysis algorithm for
+identifying transcript factor binding sites named Model-based Analysis of
+ChIP-Seq (MACS). MACS captures the influence of genome complexity to evaluate
+the significance of enriched ChIP regions and it improves the spatial
+resolution of binding sites through combining the information of both
+sequencing tag position and orientation.")
+ (license license:bsd-3)))
+
(define-public rseqc
(package
(name "rseqc")
--
2.1.0
^ permalink raw reply related [flat|nested] 2+ messages in thread
* Re: [PATCH] gnu: Add MACS.
2015-02-26 16:12 [PATCH] gnu: Add MACS Ricardo Wurmus
@ 2015-02-28 14:54 ` Ludovic Courtès
0 siblings, 0 replies; 2+ messages in thread
From: Ludovic Courtès @ 2015-02-28 14:54 UTC (permalink / raw
To: Ricardo Wurmus; +Cc: Guix-devel
Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> skribis:
> From 9c69ab1e5f1091e1f36d8ca7716c7c394d09e4c2 Mon Sep 17 00:00:00 2001
> From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
> Date: Thu, 26 Feb 2015 17:10:39 +0100
> Subject: [PATCH] gnu: Add MACS.
>
> * gnu/packages/bioinformatics.scm (macs): New variable.
LGTM, thanks.
Ludo'.
^ permalink raw reply [flat|nested] 2+ messages in thread
end of thread, other threads:[~2015-02-28 14:54 UTC | newest]
Thread overview: 2+ messages (download: mbox.gz follow: Atom feed
-- links below jump to the message on this page --
2015-02-26 16:12 [PATCH] gnu: Add MACS Ricardo Wurmus
2015-02-28 14:54 ` Ludovic Courtès
Code repositories for project(s) associated with this external index
https://git.savannah.gnu.org/cgit/guix.git
This is an external index of several public inboxes,
see mirroring instructions on how to clone and mirror
all data and code used by this external index.