From: Navid Afkhami <navid.afkhami@mdc-berlin.de>
To: 65500@debbugs.gnu.org
Cc: Navid Afkhami <navid.afkhami@mdc-berlin.de>
Subject: [bug#65500] [PATCH 2/2] gnu: Add r-mousegastrulationdata.
Date: Thu, 24 Aug 2023 13:28:28 +0000 [thread overview]
Message-ID: <feee7c4944e8282a6f8b848dc17bff2993b8ff56.1692883708.git.navid.afkhami@mdc-berlin.de> (raw)
In-Reply-To: <c6cead75b569c3dd196e91ff76d557f8969f9a41.1692883708.git.navid.afkhami@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-mousegastrulationdata): New variable.
---
gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6204173277..f3671e5cca 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8009,6 +8009,37 @@ (define-public r-motifrg
throughput genetic sequencing data sets using regression methods.")
(license license:artistic2.0)))
+(define-public r-mousegastrulationdata
+ (package
+ (name "r-mousegastrulationdata")
+ (version "1.14.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MouseGastrulationData" version
+ 'experiment))
+ (sha256
+ (base32
+ "155kci5isq7mlbvv8mdl2jjpafm3pbv1likhls70aa746spr1h17"))))
+ (properties `((upstream-name . "MouseGastrulationData")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biocgenerics
+ r-bumpymatrix
+ r-experimenthub
+ r-s4vectors
+ r-singlecellexperiment
+ r-spatialexperiment
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/MarioniLab/MouseGastrulationData")
+ (synopsis
+ "Single-Cell omics data across mouse gastrulation and early organogenesis")
+ (description
+ "This package provides processed and raw count data for single-cell RNA sequencing.
+in addition, this package offers single-cell ATAC-seq, and @code{seqFISH}
+(spatial transcriptomic) experiments performed along a timecourse of mouse
+gastrulation and early organogenesis.")
+ (license license:gpl3)))
+
(define-public r-muscat
(package
(name "r-muscat")
--
2.34.1
next prev parent reply other threads:[~2023-08-24 13:30 UTC|newest]
Thread overview: 4+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-08-24 13:28 [bug#65499] [PATCH 1/2] gnu: Add r-bumpymatrix Navid Afkhami
2023-08-24 13:28 ` Navid Afkhami [this message]
2023-08-28 8:20 ` bug#65500: [PATCH 2/2] gnu: Add r-mousegastrulationdata Ricardo Wurmus
2023-08-28 8:20 ` bug#65499: [PATCH 1/2] gnu: Add r-bumpymatrix Ricardo Wurmus
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