From: nafkhamdc <navid.afkhami@mdc-berlin.de>
To: 68262@debbugs.gnu.org
Cc: nafkhamdc <navid.afkhami@mdc-berlin.de>
Subject: [bug#68262] [PATCH] gnu: Add r-escape.
Date: Fri, 5 Jan 2024 12:39:46 +0000 [thread overview]
Message-ID: <f9d2575df3bdaa100e0fea7ff294a14961008003.1704458386.git.navid.afkhami@mdc-berlin.de> (raw)
* gnu/packages/bioconductor.scm (r-escape): New variable.
Change-Id: Ia308f9c90fa81c3304f97daa4f56ae4cd722d5cc
---
gnu/packages/bioconductor.scm | 39 +++++++++++++++++++++++++++++++++++
1 file changed, 39 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index bf38afb762..caee2842a7 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1127,6 +1127,45 @@ (define-public r-ensdb-mmusculus-v79
Ensembl.")
(license license:artistic2.0)))
+(define-public r-escape
+ (package
+ (name "r-escape")
+ (version "1.12.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "escape" version))
+ (sha256
+ (base32 "0bmin69ax7l5x3a0k9mv183277a0hl4znx02y79v2ilkgqkdm7fn"))))
+ (properties `((upstream-name . "escape")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biocparallel
+ r-broom
+ r-data-table
+ r-dplyr
+ r-ggplot2
+ r-ggridges
+ r-gseabase
+ r-gsva
+ r-matrix
+ r-matrixgenerics
+ r-msigdbr
+ r-patchwork
+ r-reshape2
+ r-rlang
+ r-singlecellexperiment
+ r-stringr
+ r-summarizedexperiment
+ r-ucell))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/escape")
+ (synopsis "Single cell analysis platform for enrichment")
+ (description
+ "R-escape streamlines gene set enrichment analysis for single-cell RNA sequencing.
+Using raw count information, Seurat objects, or @code{SingleCellExperiment} format,
+users can perform and visualize GSEA across individual cells.")
+ (license license:gpl2)))
+
(define-public r-snplocs-hsapiens-dbsnp144-grch37
(package
(name "r-snplocs-hsapiens-dbsnp144-grch37")
base-commit: ac69b423865f12310cef5662d9c303aa4b90c869
--
2.34.1
next reply other threads:[~2024-01-05 12:41 UTC|newest]
Thread overview: 2+ messages / expand[flat|nested] mbox.gz Atom feed top
2024-01-05 12:39 nafkhamdc [this message]
2024-01-10 17:49 ` bug#68262: [PATCH] gnu: Add r-escape Ricardo Wurmus
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